LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g01113	ATGGAAGAGCCTATTGTGTTGAACAAAGGTGAGGAGCCTCTAGATTTGCCTCCAGGTTTCAGGTTTCACCCTACAGATGAGGAGATAATCACTCATTATCTCACTGAGAAGGTGAAGAATAGTAGTTTCAGTGCAATTGCTATTGGAGAGGCTGATTTGAATAAGTGCGAACCTTGGGATTTACCGAAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTATCCAACTGGCATGAGAACCAATAGAGCAACAGAATCTGGATACTGGAAGGCCACTGGAAAAGATAAGGAGATTTACAAAGGGAAAGGCAACCTTGTTGGGATGAAGAAGACCCTTGTGTTCTATAGAGGGAGAGCTCCAAAGGGTGAGAAGACCAATTGGGTCATGCATGAATTCAGATTGGAGGGCAAATTTGCAAGTTACAATCTTCCTAAGGCAGCAAAGGACGAATGGGTTGTCTCAAGGGTTTTTCACAAGAACACAGATGTCAAAAAGTCCTCAATTCCTGGCCTTCTGAGGATAAACTCTATTGGGGATGATCTTCTTGACTATTCTTCACTCCCACCTCTCATGGATCCTCCTTATGGCAACACCAACACCACTAACCCACTTTCATCAACTAAATCACAATCAGAGGGTTATTATCTTCCCAGTTTCTCCATCAACAACCACCAGCAGCTTCTCATCAAGCCAGAAGACCACCACAGAAGCTATGAGATTCCCACAATCAGTTACACCTCCAACCAAGCCAATCTCAACAACAACGTTAACCCAATTGAAAACAGCACACTCTCACAACCTTCAAACATGTTCTCTGATTATTATGTGCACCAAAACAGGATCAGAAGTTCCATCATGCCAAGTATTGAAGGCTCGGGTTTCGGTAGCAACAACAACATTAGCAACCACGATCAAGCTATCCTTAGAGCATTTGCAGCCAAGAACAACGAGCACTTGGGTGGAATACTGGAGAAACAGTGCAAGATGGAGCAATTCTCTTCTAACCACTCACAAGACACGGGCTTAAGCAACGACAGAAACACCGAAACATCCTCGGTGGTTTCGAAGCAGGACAACATGGGAAGAAATCGCGCATTGTACGAGGATCTTGAAGGTCCTTCCTCAGTTGCACCTCTCTCAGATTTGGAATGCCTGCAGTGGGATGACTACTGA	1197	0.4453	MEEPIVLNKGEEPLDLPPGFRFHPTDEEIITHYLTEKVKNSSFSAIAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFASYNLPKAAKDEWVVSRVFHKNTDVKKSSIPGLLRINSIGDDLLDYSSLPPLMDPPYGNTNTTNPLSSTKSQSEGYYLPSFSINNHQQLLIKPEDHHRSYEIPTISYTSNQANLNNNVNPIENSTLSQPSNMFSDYYVHQNRIRSSIMPSIEGSGFGSNNNISNHDQAILRAFAAKNNEHLGGILEKQCKMEQFSSNHSQDTGLSNDRNTETSSVVSKQDNMGRNRALYEDLEGPSSVAPLSDLECLQWDDY	398

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g01113	398	Gene3D	NAC domain	25	172	IPR036093	GO:0003677\|GO:0006355
	Phco2g01113	398	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	15	286	-	-
	Phco2g01113	398	SUPERFAMILY	NAC domain	13	168	IPR036093	GO:0003677\|GO:0006355
	Phco2g01113	398	FunFam	NAC domain-containing protein 100-like	25	171	-	-
	Phco2g01113	398	MobiDBLite	consensus disorder prediction	339	370	-	-
	Phco2g01113	398	Pfam	No apical meristem (NAM) protein	17	142	IPR003441	GO:0003677\|GO:0006355
	Phco2g01113	398	MobiDBLite	consensus disorder prediction	339	367	-	-
	Phco2g01113	398	ProSiteProfiles	NAC domain profile.	16	167	IPR003441	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g01113	Phco-Chr2	28543680	28545154	Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Phco2g01113		NAM	3.9e-40	No_clan