Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01107 ATGGGAAGCCCTCAATCAAATTTGCCACCCGGTTTTAGGTTCCACCCAACAGATCAAGAGCTCATTCTTCACTACCTTAGTAAAAAGGTTGCATCCATACCCTTGCCCGTTTCCATCATTGCCGAGGTTGATATCTACAAGTTAGATCCATGGGACTTGCCAGCAAAGGCAACGTTTGGGGAGAAAGAATGGTATTTTTTCAGTCCTAGAGACCGAAAGTACCCAAATGGGGCAAGGCCAAACAGGGCAGCTGCTTCAGGATATTGGAAGGCCACTGGTACAGATAAGACCATAGTGACATCATTGCAAGGTGGAGCAGCCCAAGAGAACGTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCCTTGTAGACAACAACAAACCCATTAAGCTCAAAGACTCCTCCATGAGATTGGATGATTGGGTGTTGTGTCGGATTTACAAGAAGTCCAAACATGCTCTAACTCCAGCAGAGGCAACAATAGGGGTTGGTGAGGTAGATCAAGCAGAGGAACACCTATTCAAAGAGACCCTTTTACCAATCTTAAATTTTCCAACACCTCCTCCTCAGACCACATTGATATCTCAAAAATCTGTGTCCTTTTCCAACCTGTTGGATGCCGTGGACTACTCTGTACTAAGCAGTTTCTTATCAGAGAATCATTCCAACCCTGCAGGGATTGGATCAAGTGCAGGCTTCAACAGTGAGAATTTGGAACCACAATCCTCTCCAATCAACAACCCCACCAATAGCTGCACGTTTCAGAAGAACACCCAATTGAACCCTTCACTCTCCAACATGGAAAGCATGAGGCCAAAGCGCCAAGTTTCAAACATTGATGATGAAACTCCGTACCCATCAAAGAAATACCTGAGTTCCTCTTGCAACTTTCCTACATACGAGAATCCACAATGGAACTACCTCGTGAAACAGTCTTTACTGAATCAGCGGTTACTGCTTGGTCCTCAGCTTCAATTTCAAGGATAA 1038 0.4499 MGSPQSNLPPGFRFHPTDQELILHYLSKKVASIPLPVSIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVTSLQGGAAQENVGVKKALVFYKGRPPKGVKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKHALTPAEATIGVGEVDQAEEHLFKETLLPILNFPTPPPQTTLISQKSVSFSNLLDAVDYSVLSSFLSENHSNPAGIGSSAGFNSENLEPQSSPINNPTNSCTFQKNTQLNPSLSNMESMRPKRQVSNIDDETPYPSKKYLSSSCNFPTYENPQWNYLVKQSLLNQRLLLGPQLQFQG 345
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01107 345 ProSiteProfiles NAC domain profile. 8 166 IPR003441 GO:0003677|GO:0006355
Phco2g01107 345 MobiDBLite consensus disorder prediction 274 290 - -
Phco2g01107 345 MobiDBLite consensus disorder prediction 274 300 - -
Phco2g01107 345 Pfam No apical meristem (NAM) protein 9 139 IPR003441 GO:0003677|GO:0006355
Phco2g01107 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 271 - -
Phco2g01107 345 SUPERFAMILY NAC domain 4 166 IPR036093 GO:0003677|GO:0006355
Phco2g01107 345 FunFam NAC transcription factor 56 17 171 - -
Phco2g01107 345 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco2g01107 Phco-Chr2 25849481 25851087 Proximal
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco2g01107 NAM 8.3e-40 No_clan