Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01073 ATGATCATTGCATTTCACATGAAGCCTTTGGTCTTTTTCCTTTGGCTGTTTCTCCCCTCATTGGGCAAACAATTGCTAAGCTGTGAGACACCTTCACCTGATGCCTCTGGCTACCATTGCATTCAAAATGTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACTAACTCCTACTACTCCTCTCTCTCCAACCTCACCTCTTACTTGGGACTCAATAAGTTTGTGCTAGCACAAGCAAATGGATTCTCTCCACACACTGAGTTCCTCTCCCTTCATGAACCCCTTCTCATACCAATTCATTGCATATGCAAAGGTGGCTTCTCTCGTGCTCAGCTAACCAAAACTACTATCAAAGGAGAGAGCTTCTATGACATTGCTCAATCACTTGAGGGCTTGACTACCTGCAAGGCTATTAGGGACAACAACCCCGGTGTGTCACCTTGGAATCTTGATGACAAACTGAGCTTGATTATCCCATTGAGTTGTTCTTGCCCGTTTTCATCTCAACTTAGACCGCAACCAAAGCTTCTGCTTTCTTATCCTGTAACTGAAGGTGATACAATTTCCAATTTGGCCTCCAAGTTCAATATTACTGAACAAGCTATTGTCTCTGCTAATAACATATCATCACAAGGTCTCAGGGCTAGAAGTGGTCTTCCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCAATCATTGGTCCTTTGGTTAAACCCAAGGAACCTAATTCTAGCTTTCAAACAAACAGCATCCCTGTAATAAGTCCACACAAGAAGTCACTAATGTGGAAGACTGAATTGTTCATTGGGCTGGCTGGGGTTGCACTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGAAGAGAATTCATGCAAAGAAGGAGACATGGAGCTGCAACATCTGAACCAAAGTGTGAGAACCACCTCCACTAGTGACAAGAAAGTTTCATTTGAGGGGTCTCAGGATACTCTTGATGTGAAAATTGTTGATGCCACATCGCGCAAGATGTTGCTGGAGACATACACCATTGAGAATATGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCAGTATATCACGGCCGTCTGAATGGGAAGAACATGGCAATCAAGAGAACAAAGGCAGCAACAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACAACCACCCGAACATACTTAGGCTTCTTGGAACAAGCATGTCAGATGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGACTGGCTTCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCTTGCTACTGTTTCCTGACATGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGCATGACACTGAGGATCCACACTTCTATTCCACCAACCCCGCCTCTTGGAGCCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTATAATTTCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTCTGTTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCTAATGAGAAGGGGGAAGGAAGCATTTGGCTCACGGATAAAATCAAGTCCATCTTGGTGTCTGAAAATGTGAATGAACTAAGGGATTGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGAAGCAGCTGTGACCATTGTCAACATTGCAAGAGCTTGTGTGGATGAAGATTCTTCTTTGAGGCCAAGTGCAAGGGAAATTGTTGAGAAGCTATCGAGATTGGTGGAGGAATTACCAGAAGGGGAACAACACATGTCAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAACAATCATGAGTAA 2058 0.4349 MIIAFHMKPLVFFLWLFLPSLGKQLLSCETPSPDASGYHCIQNVSHNQCATFALFLTNSYYSSLSNLTSYLGLNKFVLAQANGFSPHTEFLSLHEPLLIPIHCICKGGFSRAQLTKTTIKGESFYDIAQSLEGLTTCKAIRDNNPGVSPWNLDDKLSLIIPLSCSCPFSSQLRPQPKLLLSYPVTEGDTISNLASKFNITEQAIVSANNISSQGLRARSGLPPFTSILIPLNGKPIIGPLVKPKEPNSSFQTNSIPVISPHKKSLMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEENSCKEGDMELQHLNQSVRTTSTSDKKVSFEGSQDTLDVKIVDATSRKMLLETYTIENMRKATEDFSSSNHIEGSVYHGRLNGKNMAIKRTKAATVSKIDLGLFHDALHNHPNILRLLGTSMSDGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVEHDTEDPHFYSTNPASWSLGYLAPEYVHQGIISPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRDWIDSALGENYSFEAAVTIVNIARACVDEDSSLRPSAREIVEKLSRLVEELPEGEQHMSMSESSSKPLVKAVENNNHE 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01073 685 Gene3D LysM domain 180 230 IPR036779 -
Phco2g01073 685 Gene3D Phosphorylase Kinase; domain 1 340 438 - -
Phco2g01073 685 Gene3D Transferase(Phosphotransferase) domain 1 439 675 - -
Phco2g01073 685 ProSiteProfiles LysM domain profile. 180 229 IPR018392 -
Phco2g01073 685 SMART LysM_2 181 230 IPR018392 -
Phco2g01073 685 SUPERFAMILY Protein kinase-like (PK-like) 350 651 IPR011009 -
Phco2g01073 685 Pfam LysM domain 182 217 IPR018392 -
Phco2g01073 685 ProSiteProfiles Protein kinase domain profile. 340 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01073 685 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 22 658 - -
Phco2g01073 685 FunFam PTI1-like tyrosine-protein kinase 3 439 665 - -
Phco2g01073 685 Pfam Protein kinase domain 375 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01073 685 SUPERFAMILY LysM domain 181 216 IPR036779 -
Phco2g01073 685 MobiDBLite consensus disorder prediction 664 678 - -
Phco2g01073 685 CDD LysM 181 212 IPR018392 -
Phco2g01073 685 MobiDBLite consensus disorder prediction 658 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01073 Phco-Chr2 16725156 16727213 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Phco2g01073 Pkinase 1.3e-30 CL0016