Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g01070 | ATGCGTTCAATACTATATCGTGCTATTATTGTTGGTGATTCCCGTTGCATATGTTATACATCTAGGAATTTGTGTTCTGCTTTAGGAATTAGACATTTTTCCCTTAAAGAACAACGTGAAGAAGAGCTTACCAGGTACCTGGACATTATCACTGTGAAACTTGGCAAAGGAAGCAGTGAGGAAGAAACCCTTCACACCCTCTCGAACGATCAAGCTTGTGATGCCATACCCATCTCCCAAAACCTTGTTCACCTGTTGCTCCAGCGATACAAGGATGATTGGCAGTGTGCACTGGGGGTATTCAGATGGGCTGGTTCACAGTCGAGCTTTAGACATTCGCCGGAGTCATACGATATGATGGTCGATATATTGGGTAGAATGAAGGTTATGAAAAAGTTGAGGGATTTGTTAGAAGAAATGCGTCAGAGTGGTGTGGTCACTATGAATACTGTGGCTAAGGTAATGAGACGGTTTGTTGGGGCAGGGCAGTGGGTAGATGCAGTGAAGATATTTGATGACTTGCAAACTCTTGGGTTGGAGAAGAACATAGAATCCATGAACTTGTTGCTTGATACCCTATGCAAAGAGAAATTTGTCGAGCAAGCTCGTGAAATTTTCTTGAAGCTGAAGCAGCACATTGCTCCCAATGCTCACACGTTCAACATATTCATTCACGGATGGTGCAAAATCTGCCGTGTGGAGGAGGCACATTGGACAATTGAAGAGATGAAAGGATATGGTTGTCGCCCTTGTGTTATAAGTTATTCCACTATCATTCAGTGTTACTGTCAAGAAGGGGATTTCAGCAAGGTGTATGAGCTTCTTGATGAAATGCAGGCTCAAGGGTGCTCAGCTAATGTGATAACTTATACTACTATCATGAGTGCACTGGCAAAGGCTGAAAAGTTTGAGGAAGCTTTGAAAGTACCTGAGAGAATGAGGTCTTCTGGATGTAGGCCTGATACACTTTTCTTCAATTCGTTCTTATATACATTGGGGAGAGCAGGTAGATTAGATGATGCTGCCTATGTATTCAACGTGGAAATGCCTAAGGCTGGTGTTTCCCCAAATACTTCCACCTATAATTCATTGATTTCTATGTTTTGTCATTATGCTCAAGAAAAGAGAGCTTTTGAAATACTAAAGGAGATGGAAAATTCAGACTATTGTAAGCCTGATGCCCAGACTTACCACCCATTGATCAAGTCTTGCTTTAGAACTGGAAAAATAGATAGTATGTTGAATGATATATTAAATGACATGATTAATAAATATCATCTCAGTCTTGATCTTTCAACCTATACACTGATAATTCACGGGCTTTGTAGAGGCGATAGATGCAATTGGGCGTTCTCTCTGTTCGAGGAGATGATGGATCAAGATATAGTTCCCAGATTCAGAACTTGCCGATTGCTATTGGATGAAGTCAAACAGAAAAATATGTTTCAAGCTGCTGAGAAAATTGAGGATCTTCTGAAAAAATTGTAA | 1488 | 0.4073 | MRSILYRAIIVGDSRCICYTSRNLCSALGIRHFSLKEQREEELTRYLDIITVKLGKGSSEEETLHTLSNDQACDAIPISQNLVHLLLQRYKDDWQCALGVFRWAGSQSSFRHSPESYDMMVDILGRMKVMKKLRDLLEEMRQSGVVTMNTVAKVMRRFVGAGQWVDAVKIFDDLQTLGLEKNIESMNLLLDTLCKEKFVEQAREIFLKLKQHIAPNAHTFNIFIHGWCKICRVEEAHWTIEEMKGYGCRPCVISYSTIIQCYCQEGDFSKVYELLDEMQAQGCSANVITYTTIMSALAKAEKFEEALKVPERMRSSGCRPDTLFFNSFLYTLGRAGRLDDAAYVFNVEMPKAGVSPNTSTYNSLISMFCHYAQEKRAFEILKEMENSDYCKPDAQTYHPLIKSCFRTGKIDSMLNDILNDMINKYHLSLDLSTYTLIIHGLCRGDRCNWAFSLFEEMMDQDIVPRFRTCRLLLDEVKQKNMFQAAEKIEDLLKKL | 495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 286 | 320 | IPR002885 | - | |
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 216 | 250 | IPR002885 | - | |
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 321 | 356 | IPR002885 | - | |
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | IPR002885 | - | |
| Phco2g01070 | 495 | Gene3D | Tetratricopeptide repeat domain | 349 | 495 | IPR011990 | GO:0005515 | |
| Phco2g01070 | 495 | PANTHER | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 | 186 | 488 | - | - | |
| Phco2g01070 | 495 | Gene3D | Tetratricopeptide repeat domain | 54 | 210 | IPR011990 | GO:0005515 | |
| Phco2g01070 | 495 | Gene3D | Tetratricopeptide repeat domain | 211 | 280 | IPR011990 | GO:0005515 | |
| Phco2g01070 | 495 | Gene3D | Tetratricopeptide repeat domain | 281 | 348 | IPR011990 | GO:0005515 | |
| Phco2g01070 | 495 | Pfam | PPR repeat | 427 | 457 | IPR002885 | - | |
| Phco2g01070 | 495 | Pfam | PPR repeat | 116 | 145 | IPR002885 | - | |
| Phco2g01070 | 495 | NCBIfam | pentatricopeptide repeat | 433 | 464 | IPR002885 | - | |
| Phco2g01070 | 495 | NCBIfam | pentatricopeptide repeat | 360 | 393 | IPR002885 | - | |
| Phco2g01070 | 495 | NCBIfam | pentatricopeptide repeat | 218 | 250 | IPR002885 | - | |
| Phco2g01070 | 495 | NCBIfam | pentatricopeptide repeat | 325 | 358 | IPR002885 | - | |
| Phco2g01070 | 495 | NCBIfam | pentatricopeptide repeat | 253 | 286 | IPR002885 | - | |
| Phco2g01070 | 495 | NCBIfam | pentatricopeptide repeat | 288 | 322 | IPR002885 | - | |
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 113 | 147 | IPR002885 | - | |
| Phco2g01070 | 495 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | IPR002885 | - | |
| Phco2g01070 | 495 | Pfam | PPR repeat family | 181 | 229 | IPR002885 | - | |
| Phco2g01070 | 495 | Pfam | PPR repeat family | 356 | 405 | IPR002885 | - | |
| Phco2g01070 | 495 | Pfam | PPR repeat family | 250 | 299 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g01070 | Phco-Chr2 | 16592719 | 16594206 | Dispersed |