Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01054 ATGTCATCACTATTTGCATCGTGTATATTCTTATTTCCTTTTGTCCTACTGGAAAAAAAGGATGTTGATTTTGATTCGGAAGCAAAAAAACAAGTTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGAGGCGTCGTGATCAGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCAATGTAATAAGTCGGATAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTTAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATATGGCATGGTACCTATGATGTTTCCTGGAATACAGCAGTACATGCCAGCAATTGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAGCAAACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCTCCTTTTCCAGCAGTTGCTCATTTGGGACCAAGGTTTCCAATGCCTCCCTTCCACATGCCGTGTGTTCCTGCAACAAATTCATCAAGAATGCAAGCAGAAAATTAG 525 0.4133 MSSLFASCIFLFPFVLLEKKDVDFDSEAKKQVRGSTSTKRSRAAERRRDQINEKMRALQELIPQCNKSDKASMLDEAISYFKSLQLQVQMMSMGYGMVPMMFPGIQQYMPAIGMGVGMGMGMEMGMSKPVMPFPNMLPGSPFPAVAHLGPRFPMPPFHMPCVPATNSSRMQAEN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01054 174 Pfam Helix-loop-helix DNA-binding domain 46 85 IPR011598 GO:0046983
Phco2g01054 174 MobiDBLite consensus disorder prediction 27 48 - -
Phco2g01054 174 Coils Coil 41 61 - -
Phco2g01054 174 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 40 101 IPR036638 GO:0046983
Phco2g01054 174 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 25 166 IPR031066 -
Phco2g01054 174 CDD bHLH_AtPIF_like 42 98 IPR047265 -
Phco2g01054 174 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Phco2g01054 174 Gene3D - 33 93 IPR036638 GO:0046983
Phco2g01054 174 SMART finulus 42 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01054 Phco-Chr2 15711423 15712618 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g01054 HLH 1.2e-09 No_clan