Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01026 ATGGATTGGGACGGGAAAGAGTTTGCCTGGGATCCACGTGGGCTGGAGCTGGCTGATGGTGAAGGACAGAGGAATGAAGCTGCTTCGGTGGATTTGAGGCTTGGTGAGGAAAAATCAGTTCCAGATGTTGCTAAGGACCCAAGAGACTCCAAAACTGTGTCTTCACCGTCTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATATGTGCTGTTCTGTTGATGGATGCAGCTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAAACCCCAGTTGTGTTGGTGGGGGGCAAGCAACAACGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTTGGAGAATTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGACATAACAGGCGCAGGAGGAAACCTCAGCCTCCCTCTCTTTTCATGGCTACTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCATTTTGGGAGCCCGGAGACCTATGTCAACCCTATTATGAGGAGTATGTGGTCTGCCACTGCTAAACCTGGAGCTGAATCTGGTTATGATCCACCTCGACTGTTATACAGAATTGACAAGCACAAGCAAGACAAGGGACATCCTCTTTGGCAAGAAAATGATCCTATAGTAGGCAATGGTAATGAAGCAATGCTTGAAACTCCCATTTGTCAGCCTATTCATGGCACCATCACCCCATCAACTGGTGGAAAGAGCAGCCGAAAGCACTCTTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGCCCAGAGTCGAGTATGGTGCAATCTAGCATCACCTGTCCAATGCAATCTCCATCAGGATCTGTGCATTTTGATACTGTGAATGAATATGCGTACTCAGAAACGGAAAAAGATAAGCCTAGTGGTCAAGTATTGGTTCTTGATGCAAACACCACCAACCTTCATTACAATGGAATGCTGCAAATGGGGCTCGATGGTTTGGTTGAAAATGACGACCCATTGACACTTCCCTTCTTGTGGGAGTAG 1095 0.4676 MDWDGKEFAWDPRGLELADGEGQRNEAASVDLRLGEEKSVPDVAKDPRDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMATEKFMYNYKGPRILHFGSPETYVNPIMRSMWSATAKPGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPIVGNGNEAMLETPICQPIHGTITPSTGGKSSRKHSSDAKPGSFDSGCALYLLSTLQSQSPESSMVQSSITCPMQSPSGSVHFDTVNEYAYSETEKDKPSGQVLVLDANTTNLHYNGMLQMGLDGLVENDDPLTLPFLWE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01026 364 MobiDBLite consensus disorder prediction 1 69 - -
Phco2g01026 364 MobiDBLite consensus disorder prediction 1 20 - -
Phco2g01026 364 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Phco2g01026 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 299 IPR044817 GO:0003677
Phco2g01026 364 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Phco2g01026 364 MobiDBLite consensus disorder prediction 30 49 - -
Phco2g01026 364 MobiDBLite consensus disorder prediction 50 69 - -
Phco2g01026 364 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Phco2g01026 364 MobiDBLite consensus disorder prediction 245 265 - -
Phco2g01026 364 Pfam SBP domain 74 147 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01026 Phco-Chr2 14477248 14479786 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco2g01026 SBP 1.8e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01026 2 14477248 14479786 Phco2g01026 2 14477248 14479786 ECH