Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01015 ATGGAAGTGTTAAACCCAGTTGAAGGCAAGACCTATAGGCTCCCAGTTGGGTACAGGTTCGACCCCACTGATGAAATTCTTGCAGGCTACTACCTAAGGAAGAGGATCATGGCACAGCCACTCCCTAATGACCTCATCCAAGACTGTGATGTTCACCAGACTGAGCCTTGGGCGCTCCCAGGAGGTGGGAAGTATATGAATTGGCAGAGGTTTTTCTTCTATGATGTGAGGACCCATGTCTTTGAAAACCCTGAAAAGAGAGATGCTGGGAAAGGCCAATGGAAAGTAGTGGAGAAAGATCAAGAGGTTGAGTTTTCAGCCGAACAAGTCATTGCAAAAAAGAGCGTTCTGGTTTTCTGGAAAGCCAAGGGCAACTCTCTTGCCAAAACAAATTGGGTGATGCATGAGTTTCGTCTTGCCCTAAAGTCACATCCATCCAAGATGTCAGCTATGGCTGTGTGCCGCATACTCGAAACAAAGGTTTCGAGGCGGCCAAAGAAGGCAAAAGAGTCTGAAGGGGTGACCTCTAACAGGAGCAATGTTGAAGAAGCTATGGATGTGACACCCACTGTCATTGATTTCACAGTGGAGTGTGGCACTGAGACTGGTCCTCCCCCTCCTGGGACCCCCTGA 633 0.4866 MEVLNPVEGKTYRLPVGYRFDPTDEILAGYYLRKRIMAQPLPNDLIQDCDVHQTEPWALPGGGKYMNWQRFFFYDVRTHVFENPEKRDAGKGQWKVVEKDQEVEFSAEQVIAKKSVLVFWKAKGNSLAKTNWVMHEFRLALKSHPSKMSAMAVCRILETKVSRRPKKAKESEGVTSNRSNVEEAMDVTPTVIDFTVECGTETGPPPPGTP 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01015 210 PANTHER NAC TRANSCRIPTION FACTOR 56 14 167 - -
Phco2g01015 210 Gene3D NAC domain 23 163 IPR036093 GO:0003677|GO:0006355
Phco2g01015 210 ProSiteProfiles NAC domain profile. 14 159 IPR003441 GO:0003677|GO:0006355
Phco2g01015 210 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Phco2g01015 210 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01015 Phco-Chr2 13763969 13765309 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco2g01015 NAM 9e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01015 2 13763969 13765309 Phco5g01222 5 46151215 46155006 PCT