Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01009 ATGGTAATAACAAACCCTATGCGTCATTGTCACAGACACCTTGCCAACCAAGTACTGGTGTTGGTAATCAAAGACCTTCCATTCGATGCGCACCCACCACAACCATCACCGTCAGGTGCGCCGTGGACAAATGACGCCGTCACGGAGGTTCTGCGCTCCATCTCCCGCTATACCCTCCAATCACCTCGCTCCATCGGTCGCCAGAGCGGCTTCCGCCACCGCACCCCGCTGCGGCAGCGCAACCTCAACCTCGAACACCACAAGCTCCCCAACAACACCCTCGTCTTGGGCCCCGCTGCCCACCAAGACCCTTACAAGGTCCACCTCGGCCCACTAAAGGCCCTCGAGTTCTTCCGCTGGGTGGAAGCCCGCTTTGCCTTTGCCCATTCCGAAGCCACGTGCCGCGAGCTGGTCTGCCTCCTCGCCCGCGCCAGCACAATCAAGCCCCTCTGGAACTTCCTCAAACAGTACCCTCACGTGACCACCGCCACCGTCACGTGCGTCATCAAACTCCTCGGAGAACAAGGCCTCGCGGACGAAGCCTTGCTCACCTTCCACCGAATGAAACAGTTCCGCTGCAAACCCGATACCCACTCCTACAACGCGCTGATCCACGCGCTCTGCTGCGTGGGGAACTTCACGAAGGCGCGTTTCCTTCTCCAGCAAATGGAGCTTCCTGGTTTCCAGTGCCCGCCGGACACCTTCACCTACACGATTCTCATTAGCTCTTACTGCCGCCACGGCAGGCTCACCGGCTGCCGGAAGGCAACGCGCCGGAGGATTTACGAGGCCGGGCGTCTCTTCCGGTCGATGCTTTTCAAAGGGTTGGTTCCCGATGTTGTGACTTACAATGCCATAATTGATGGGTGCTGTAAGACGTGGCGCGTGGAGAGGGCTTTGGAGTTGTTCGATGATATAAAGACAAGGGGTGTTGTTCCGAACCATGTTACTTATGGGTCTTTCATAAGGTACTATAGTGTTGTGAATGAGATTGACAAGGCTGTTGAGATGTTGAGGGAAATGCAGAGGTTGGGGCATGGGGTTCCCGGTTCGAGTTCAGAGTATACTTATGAGTTGGTTTGTGATGCGCTTCGCGCTGCCGGGGAGTGTGGCTTGTTGTTGGAGGAGGGTGGGGTGCACAAGAGAATAAAGGATGGCATATGGAATAGATATAGGCAAATGATGAAGGTGAAACCTGTTATGGCTCGCAAGGGCTATCCTGAGATGGAGGAACCAGTTTGA 1242 0.558 MVITNPMRHCHRHLANQVLVLVIKDLPFDAHPPQPSPSGAPWTNDAVTEVLRSISRYTLQSPRSIGRQSGFRHRTPLRQRNLNLEHHKLPNNTLVLGPAAHQDPYKVHLGPLKALEFFRWVEARFAFAHSEATCRELVCLLARASTIKPLWNFLKQYPHVTTATVTCVIKLLGEQGLADEALLTFHRMKQFRCKPDTHSYNALIHALCCVGNFTKARFLLQQMELPGFQCPPDTFTYTILISSYCRHGRLTGCRKATRRRIYEAGRLFRSMLFKGLVPDVVTYNAIIDGCCKTWRVERALELFDDIKTRGVVPNHVTYGSFIRYYSVVNEIDKAVEMLREMQRLGHGVPGSSSEYTYELVCDALRAAGECGLLLEEGGVHKRIKDGIWNRYRQMMKVKPVMARKGYPEMEEPV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01009 413 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 259 360 - -
Phco2g01009 413 NCBIfam pentatricopeptide repeat 198 224 IPR002885 -
Phco2g01009 413 NCBIfam pentatricopeptide repeat 164 197 IPR002885 -
Phco2g01009 413 NCBIfam pentatricopeptide repeat 235 254 IPR002885 -
Phco2g01009 413 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Phco2g01009 413 NCBIfam pentatricopeptide repeat 316 346 IPR002885 -
Phco2g01009 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Phco2g01009 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Phco2g01009 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Phco2g01009 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Phco2g01009 413 Gene3D Tetratricopeptide repeat domain 255 376 IPR011990 GO:0005515
Phco2g01009 413 Gene3D Tetratricopeptide repeat domain 105 254 IPR011990 GO:0005515
Phco2g01009 413 Pfam PPR repeat 164 193 IPR002885 -
Phco2g01009 413 Pfam PPR repeat family 195 246 IPR002885 -
Phco2g01009 413 Pfam PPR repeat family 278 322 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01009 Phco-Chr2 13268220 13269557 Dispersed