Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00960 ATGTTGCCCTGCGATTACTGCCACTCCAAACCCGCCTTACTCTTCTGCCGACCCGACTCCGCCAAGCTCTGTCTCCTCTGCGACCACCACGTCCACACCGCTAACGCCCTCTCCCTCAAGCACGTCCGCTTCCAGATTTGCGCCAACTGCAACACCGCCGCCACCGTCCACTGCTCCGCCGACAATCTCCTCCTCTGTCACAGCTGCGACCTCGACGCTCACGCCCACGCCCCCGCCTCCCTCCACCATCGCCACCGCCTCCACGGCTTCTCTGGCTGCCCCTCCCTCCCCGAGATGGCCTCCGCCCTCGGCCTCGATTTGCGGCCACGCCACGCCAACTGCCGCGACGAGGTCTACGAGCAGGTCCTCGAAGTCGCGCGCAAGAGGAACGAGAACGAGTTTGCTTGTGCCGAGACCGGTGAATTCAGGTTCGACTCCGAAAACGACGTCGTCGATGAGATGTTGCTGCAGCAGACGCCGTTCACGTCCTTGCTCGGGATGCCCGATTCCCAATCTGAATTTGACGCCGCCAAAAGTAAGGATAACGGTTACGGAGGCCAAGCAGGAGATCTTCACTGGAGTTTTGATCCCAACTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGGTTGTGATGAACCAAGAGTGGTGACATTTGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTGCACAATATGAATTACTCGATTGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAAGAAGAAAGCAACAAGAAAGCTAGAGGTGGGTTATCAACAGAGTCCAAATTGTTAGAATCCATACCGTACAGTGCCACCAACAACGTCGTAGTCATGGAGCATCTAGTGGGTGGGAATGCAAATGTTAGCACCTTAAAAGCCAGGGTTGGCTTGGAAGAGTTGGCTAAGAATAGAGGTGATGCCATGTTACGCTACAAAGAGAAGAAGAAATCTCGAAGGTATGATAAGCACATTCGCTACGAATCAAGAAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGCTCAAGCGTGA 1107 0.5285 MLPCDYCHSKPALLFCRPDSAKLCLLCDHHVHTANALSLKHVRFQICANCNTAATVHCSADNLLLCHSCDLDAHAHAPASLHHRHRLHGFSGCPSLPEMASALGLDLRPRHANCRDEVYEQVLEVARKRNENEFACAETGEFRFDSENDVVDEMLLQQTPFTSLLGMPDSQSEFDAAKSKDNGYGGQAGDLHWSFDPNYQPPQVWDFQLQKSRGCDEPRVVTFDGLEVPKSFQDVHNMNYSIGDDILSRNNQSDQSSSSHAKKEESNKKARGGLSTESKLLESIPYSATNNVVVMEHLVGGNANVSTLKARVGLEELAKNRGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKASDAQA 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00960 368 MobiDBLite consensus disorder prediction 244 276 - -
Phco2g00960 368 MobiDBLite consensus disorder prediction 341 361 - -
Phco2g00960 368 CDD Bbox1_BBX-like 3 46 - -
Phco2g00960 368 SMART bboxneu5 1 46 IPR000315 GO:0008270
Phco2g00960 368 Pfam CCT motif 321 363 IPR010402 GO:0005515
Phco2g00960 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 366 - -
Phco2g00960 368 MobiDBLite consensus disorder prediction 331 368 - -
Phco2g00960 368 MobiDBLite consensus disorder prediction 258 272 - -
Phco2g00960 368 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Phco2g00960 368 ProSiteProfiles CCT domain profile. 321 363 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00960 Phco-Chr2 12131206 12134566 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco2g00960 CCT 1.7e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00960 2 12131206 12134566 Phco2g00960 2 12131206 12134566 ECH