Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00937 ATGATGGAGGGCTACACGCTTCCCGCACCACCCACTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAAGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTACCTTTAAATCCATGCTTCAACAACAACCTCAACCACAACAACCACAACTTGACTCCTTCTTCAACTTCAACATCAACTCTGCAACTTCCATTCCCTTTGCTCCAAATATGGAATCTTTTCCTGCTCTAGACCCCTTCTCACCTTCACTTCCACCACCTCCTTTCTTCAACACCAACACCAACACCTTGCCCTTTGACCCGGGCTTTGACTTGGGCCTCGACACTGGGCTTCACTCTTCATGTCCCCCTCTTTTCTCCCAGCAGCTTCAGCAGGGCTTCGAGTTTGGAGAACTGGAAGCTCTGACTGCACCTGGGAATGTTCCGTTTTTGGACGGAGCAAAAGGGGACAACCCTCTTGAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGGTGAGGAAGGGAGTAGTGCTGACGTGGATGGTTCAGGGTTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGGGAAGTGAGACTGGTGGGGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATAACGAACTGGAAATGACTCCGGGCTCGTTGCTGCCACCATCTACTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACCCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAATCAAGCTGCAAAGGTTGAAGTTAGAGTAAGAGAAGGGAGAGCTGTCAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTTTCTACCATGAGGGCTTTGGACAACCTTGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAGGCTGAGCAGTGCAGAGAAGGCCAGGATGTGCTTCCTGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCAGGCTTCCAGGGTATGATGTGA 1284 0.5125 MMEGYTLPAPPTEEDAPPPSWGRPNSQEEDIAIALGAPLTFKSMLQQQPQPQQPQLDSFFNFNINSATSIPFAPNMESFPALDPFSPSLPPPPFFNTNTNTLPFDPGFDLGLDTGLHSSCPPLFSQQLQQGFEFGELEALTAPGNVPFLDGAKGDNPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEGEEGSSADVDGSGLNYESDENDNGNNGLKGSETGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELEMTPGSLLPPSTSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLLDSAGFQGMM 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00937 427 SMART finulus 241 290 IPR011598 GO:0046983
Phco2g00937 427 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 106 423 - -
Phco2g00937 427 CDD bHLH_AtAMS_like 238 301 - -
Phco2g00937 427 MobiDBLite consensus disorder prediction 169 246 - -
Phco2g00937 427 MobiDBLite consensus disorder prediction 1 29 - -
Phco2g00937 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Phco2g00937 427 MobiDBLite consensus disorder prediction 225 246 - -
Phco2g00937 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 308 IPR036638 GO:0046983
Phco2g00937 427 FunFam BHLH transcription factor 231 299 - -
Phco2g00937 427 MobiDBLite consensus disorder prediction 208 222 - -
Phco2g00937 427 MobiDBLite consensus disorder prediction 169 194 - -
Phco2g00937 427 CDD ACT_UUR-ACR-like 356 397 - -
Phco2g00937 427 Pfam Helix-loop-helix DNA-binding domain 242 284 IPR011598 GO:0046983
Phco2g00937 427 Gene3D - 229 299 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00937 Phco-Chr2 11778860 11782154 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g00937 HLH 1.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00937 2 11778860 11782154 Phco2g00937 2 11778860 11782154 ECH
Phco2g00937 2 11778860 11782154 Phco5g01280 5 47454094 47456837 PCT