Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00916 ATGGATCTTCTTTTCCTTCTTCAGTGCCTTCTCTTCTTCACTTCGCATCACGCAAATGCCCTCAATGCTTCCATTTCTCGCGACGCATTGTCCCTTCTCTCTTTCAAAAGCTTCGTCTCTTCCGACCCTTCCAATTTCCTCGCCGGTTGGAACAACCGCACCTCCTCCAATCTCTGCCGATGGCCCTCCGTCGCGTGCGGCAGCACCGGGAGCCTCTCTGGCCGAGTCACTTCCCTCAATGTCACCGGTCTCGGCGGCGGGCAGTTGTCACCCTCCGTCGGTGACTTGTCCGAGCTCCGCGTTCTGTCCCTCGCCGGAAACATGTTTTCCGGCGAGATTCCTTCTACCGTAGGAAATCTGCGGTTTCTCGAGGTCCTCGAACTGCAAGGAAACAACTTTTCAGGGAGAGTCCCGACCCAGATGAGTTTTGCTTTTCTTCAGTCTCTTAAACTTATTAACATCTCTGGTAATGCCTTCTCTGGTTCGATTCCGAGTGAGATTATTGGCTCTGGGAGTGTGAAAATCGTTGATTTGTCGAATAATCAGTTTTCTGGTGTGATTCCTCTGAATGGTACTTGTGATTTGTTGAAGCATTTGAAGTTGTCTCGTAACTTTTTGACTGGGGAGATTCCACCCCAAATTGGGAAATGTAGAAACTTGAGGACTCTTTTGGTTGATGGGAACATCTTGGAAGGTAGAATACCTTCTGAGATTGGCCATCTTGTTGAACTGAGAGTTCTGGATGTTTCTAGAAACTCCCTAACTGGAAGGGTCCCTAAGGAGTTGGCTAATTGTGGGAAACTGTCTGTGCTTGTGCTTACTGATTTGTTTGAAGATCGTGATGAGGGAGGATTGGAGGATGGCTTTAGAGGAGAGTTTAATGCCTTTGTTGGGAACATACCTCCTCAAGTGTTTCTGCTTTCAAGTCTAAGGGTGTTGTGGGCTCCACGAGCGAATCTTGGTGGTCGGTTGCCTGGTGGTTGGTCGGATTCGTGCTCTCTGAGGGTGCTCAATTTGGTGCAGAATTATGTTACCGGTGTCTTGCCTGAGAATTTGGGGATGTGTAGGAATTTGAGTTTCTTGGACTTGAGTTCTAATAATTTGGTGGGGTATCTGCCTTCATTGCAGCTTCATGTTCCTTGTATGGTGTACTTCAATGTCAGCAGAAATAATATATCTGGCACTCTTAAAGGATTTAGGAAAAAGAGCTGTGGTTTGAGTGCACTAGACCCTTCATTCCTAGAACTGGATGGTTTTAGTGATGATGCATACTTTAATTTTCCTGTTTGGAGGTTTCAGAAGAATGCTTTCATTGGATCTGGTTTTGAGGAGAATAACACTATAGTTGTTAGCCATGATTTCAGTTGGAATAGTTTTGTGGGCTCCTTGCCTTTGTTCTCTCTTGGAGATAGTCTTTTTAGTGCTAATCGTAAAGTCTCCTATGCACTGTCTCTCAATAATAATAGGTTCAATGGAACTCTACCGGAGCAGTTAGTTTCAAACTGTAACGACCTCAAGACATTGTCAGTTAACTTGAGTGTGAACCAACTATCGGGTGGGAATTTCCAAAAGTCGGTTTTGGAGTGCCTAAAGTTAACAGATTTTGAAGCAGCATACAACCAGATTGATGGGTCAATTGGACCAGGTATAGGTGACTTGGTGATGCTTCAACATCTTGATTTAAGTGGGAACAAGTTATCTGGATCACTGCCAAATCAGTTGGGAAACGTACAAAACATGAAATGGATGTATCTGGGAGGAAACAATCTAACGGGGGAAATTCCTTCCCAACTTGGCCAATTGACTTCCCTTGCTGTTTTGAATCTGTCTCACAATGCTCTGGTTGGAACCATTCCTGGGAGTTTGTCAAATGCCAAAAGTTTTGAAATTCTGTTGGTGGACCACAACAAACTTTCTGGGGATATACCTTTAACTTTTTCTACTCTTTCCAATCTTGTGCAGCTGGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCGTCTTCAACACCCAAGTGACTGTGATTCCTATAAAGGAAATGCACACCTGCATCCTTGCCCTGATCCATATTCTGACTCACCTGCTTCTCTTCCAGTACCCCTTGAAATCCAGCATCATACTCAAAGAGGGAGAAAATTAAGGACATTGGTTATTGTTGTGGTCACTTCTGCTTCTGTGGTGCTCTGCACGCTTCTGGGAATAGTATTTGTAATATTTTCTGGAAGGAGTAAATTTGGTCGGCTTAGCAGTATAAGAAGGCGACAAGTAGTGACCTTTGAAGCTGTTCCAACTGAATTGAGTTATGACAGTGTGGCCACAGCTACTGGAAACTTCAGCATCCGACATCTAATTGGCACAGGCGGCTTTGGGTCAACGTACAAGGCAGAACTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGGTTTCAAGGCATTCAACAGTTTGAAACGGAAATAAGGACACTAGGAAGAATTCGACACAAGAATCTTGTGACTCTTATTGGCTATTATGTTGGGAAGGCTGAAATGTTCTTAATTTACAACTATCTTTCTGGTGGGAACCTTGAAGCTTTCATACATGACAGTTCAGGGAAAAATGTTCAGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCACTTGCTTTCCTTCACTACTCATGTGTTCCTCGCATTGTTCACCGGGATATCAAACCTAGCAACATTTTACTTGATGAATATCATAATGCCTACCTGTCGGATTTTGGCTTGGCACGACTACTTGAGGTAACTGAGACCCATGCCACCACTGATGTTGCAGGCACATTTGGTTACGTTGCACCAGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTCTACAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCTTTTTCTGAGTATGGAAATGGATTCAACATTGTACCCTGGGCAGAGCTACTAATGACCGAAGGCCGTTGTTCTGAGCTATTTTCATCTACTTTGTGGGAAGCAGGGCCTAAGGAAAAATTGTTGGGGCTTTTAAAGCTTGCATTAACATGCACAGAAGAGACTCTTTCTATTCGACCATCAATGAAACTGGTTCTTGAGAAATTGAAATATTTGAAAAGTTGA 3168 0.4369 MDLLFLLQCLLFFTSHHANALNASISRDALSLLSFKSFVSSDPSNFLAGWNNRTSSNLCRWPSVACGSTGSLSGRVTSLNVTGLGGGQLSPSVGDLSELRVLSLAGNMFSGEIPSTVGNLRFLEVLELQGNNFSGRVPTQMSFAFLQSLKLINISGNAFSGSIPSEIIGSGSVKIVDLSNNQFSGVIPLNGTCDLLKHLKLSRNFLTGEIPPQIGKCRNLRTLLVDGNILEGRIPSEIGHLVELRVLDVSRNSLTGRVPKELANCGKLSVLVLTDLFEDRDEGGLEDGFRGEFNAFVGNIPPQVFLLSSLRVLWAPRANLGGRLPGGWSDSCSLRVLNLVQNYVTGVLPENLGMCRNLSFLDLSSNNLVGYLPSLQLHVPCMVYFNVSRNNISGTLKGFRKKSCGLSALDPSFLELDGFSDDAYFNFPVWRFQKNAFIGSGFEENNTIVVSHDFSWNSFVGSLPLFSLGDSLFSANRKVSYALSLNNNRFNGTLPEQLVSNCNDLKTLSVNLSVNQLSGGNFQKSVLECLKLTDFEAAYNQIDGSIGPGIGDLVMLQHLDLSGNKLSGSLPNQLGNVQNMKWMYLGGNNLTGEIPSQLGQLTSLAVLNLSHNALVGTIPGSLSNAKSFEILLVDHNKLSGDIPLTFSTLSNLVQLDVSFNNLSGHIPRLQHPSDCDSYKGNAHLHPCPDPYSDSPASLPVPLEIQHHTQRGRKLRTLVIVVVTSASVVLCTLLGIVFVIFSGRSKFGRLSSIRRRQVVTFEAVPTELSYDSVATATGNFSIRHLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMFLIYNYLSGGNLEAFIHDSSGKNVQWPVIYKIAKDIAEALAFLHYSCVPRIVHRDIKPSNILLDEYHNAYLSDFGLARLLEVTETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSTLWEAGPKEKLLGLLKLALTCTEETLSIRPSMKLVLEKLKYLKS 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00916 1055 Pfam Protein kinase domain 781 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00916 1055 Gene3D Ribonuclease Inhibitor 22 86 IPR032675 -
Phco2g00916 1055 Gene3D Ribonuclease Inhibitor 289 473 IPR032675 -
Phco2g00916 1055 Gene3D Ribonuclease Inhibitor 474 695 IPR032675 -
Phco2g00916 1055 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 447 691 - -
Phco2g00916 1055 SUPERFAMILY L domain-like 297 672 - -
Phco2g00916 1055 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524
Phco2g00916 1055 Gene3D Phosphorylase Kinase; domain 1 742 854 - -
Phco2g00916 1055 Gene3D Ribonuclease Inhibitor 87 276 IPR032675 -
Phco2g00916 1055 FunFam Leucine-rich repeat receptor-like protein kinase 25 189 - -
Phco2g00916 1055 PRINTS Leucine-rich repeat signature 556 569 - -
Phco2g00916 1055 PRINTS Leucine-rich repeat signature 601 614 - -
Phco2g00916 1055 SMART LRR_typ_2 241 265 IPR003591 -
Phco2g00916 1055 SMART LRR_typ_2 146 170 IPR003591 -
Phco2g00916 1055 SMART LRR_typ_2 649 671 IPR003591 -
Phco2g00916 1055 SMART LRR_typ_2 553 577 IPR003591 -
Phco2g00916 1055 SMART LRR_typ_2 96 120 IPR003591 -
Phco2g00916 1055 SMART LRR_typ_2 601 625 IPR003591 -
Phco2g00916 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Phco2g00916 1055 SUPERFAMILY Protein kinase-like (PK-like) 757 1050 IPR011009 -
Phco2g00916 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 483 1051 - -
Phco2g00916 1055 Pfam Leucine Rich Repeat 196 217 IPR001611 GO:0005515
Phco2g00916 1055 Pfam Leucine Rich Repeat 556 576 IPR001611 GO:0005515
Phco2g00916 1055 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 277 - -
Phco2g00916 1055 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Phco2g00916 1055 SUPERFAMILY RNI-like 82 410 - -
Phco2g00916 1055 SMART serkin_6 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00916 1055 Gene3D Transferase(Phosphotransferase) domain 1 855 1054 - -
Phco2g00916 1055 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 743 854 - -
Phco2g00916 1055 ProSiteProfiles Protein kinase domain profile. 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00916 1055 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 855 1055 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00916 Phco-Chr2 11389598 11392765 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Phco2g00916 Pkinase 3e-41 CL0016