Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00878 ATGGAGGCCAAGTTGGGCGGCGGCGGCGGCGTTATGGCGGCGACCTTGGACGAATTCAAGTGGATCTCCTTTATGTTCGATCACGACATAAACGACGACGTCAAACCCTGCAAGCTCGACAACTTCACCGGCGCTTCTGGTCTCCTCAACGACGCTTTCCAAAATCTGGTTCTTCGACATCGCCCTCTCCTCGCCGGCGACCAAGTTCCTATCCGCCGCGGAAAGTGCCAATACGGCCGTCAGGAGGGCGGGGATATGAAGGTCGCCGTGAACGGCGTGGAGTGGACTGGGCAAAAGCCATGGCTTTTCACTGGTGGAGTAACTGCATTTTCAACTTGTGGTGAAATAACTGATAATATCCTCGTCCAATCTCAAGACCTCACTCCCATTCAATCTACTATCTCTGCAACTATTGATTCTCAGTCTTCCATTTGTGATACTGTTGGGAGCCCAGTTTCTGCTAACAAACCAAATGTAAGAGATAATAAAGTGAAAGGGGCGACCACAACAAGTGGTTCCTCACGTGACCCATCTGATGAAGATGATGAACAAAGCACAACTGTTGAGACCAAGCGTCTTAGAAGGAAGAATTCTAATAGAGAGTCTGCAAGAAGGTCCAGAAGAAGAAAACAAGCCCATTTGGCTGACTTGGAGTGGCAAGTTGAACGGCTGAGGCAGGAGAACTCACACTTATTCAACCAGCTTAGCGATGCAAGCCAACAATTCCGTGATGCTGATACCAATAATCGAGTGCTAAAATCAGATGTTGAAGCTTTAAGAGCTAAGGTAAAGTTAGCTGAGGAAATGGTGAGAAGGGGTACAATGATCACCCCCTTCAACAACCAGATTCTTCCAAACCAGACTCAATCAGTTCTCAACACCAATACTAATAATCTGCGTCGCATGGCACATGTCTCACCAACCATCACTGTGCATGGGAATGATGGTGCTTCATATGGTGGTGGAATCACAGTTAGTGGAGAAACCTCATCACCCCTTCTGCTTGGAAACTTGGATATAGCTTCCAGTGATTTCAATAGTGATAATGGTGTGAGCTCTATAACTAGCATGTGGGCTTAA 1080 0.4741 MEAKLGGGGGVMAATLDEFKWISFMFDHDINDDVKPCKLDNFTGASGLLNDAFQNLVLRHRPLLAGDQVPIRRGKCQYGRQEGGDMKVAVNGVEWTGQKPWLFTGGVTAFSTCGEITDNILVQSQDLTPIQSTISATIDSQSSICDTVGSPVSANKPNVRDNKVKGATTTSGSSRDPSDEDDEQSTTVETKRLRRKNSNRESARRSRRRKQAHLADLEWQVERLRQENSHLFNQLSDASQQFRDADTNNRVLKSDVEALRAKVKLAEEMVRRGTMITPFNNQILPNQTQSVLNTNTNNLRRMAHVSPTITVHGNDGASYGGGITVSGETSSPLLLGNLDIASSDFNSDNGVSSITSMWA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00878 359 MobiDBLite consensus disorder prediction 148 212 - -
Phco2g00878 359 Gene3D - 190 246 - -
Phco2g00878 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Phco2g00878 359 FunFam BZIP transcription factor 189 240 - -
Phco2g00878 359 Coils Coil 207 241 - -
Phco2g00878 359 MobiDBLite consensus disorder prediction 148 174 - -
Phco2g00878 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 252 IPR004827 GO:0003700|GO:0006355
Phco2g00878 359 SMART brlzneu 187 251 IPR004827 GO:0003700|GO:0006355
Phco2g00878 359 Pfam bZIP transcription factor 189 237 IPR004827 GO:0003700|GO:0006355
Phco2g00878 359 Coils Coil 249 269 - -
Phco2g00878 359 PANTHER BASIC LEUCINE ZIPPER 63 120 332 - -
Phco2g00878 359 CDD bZIP_plant_GBF1 192 243 IPR045314 GO:0003700|GO:0006355
Phco2g00878 359 MobiDBLite consensus disorder prediction 175 196 - -
Phco2g00878 359 SUPERFAMILY Leucine zipper domain 191 241 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00878 Phco-Chr2 10563399 10571826 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g00878 bZIP_1 4.2e-11 CL0018