LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g00873	ATGCCTGAACTCCGAAGCCGAAGAAACCGGGCAACGTTGCATGACCGAAACCCAAACCCAAACCCAAACCCGAACCCGAACCCAAAAACCCGCCAGAGAAGAACGAGAAGAACCACAGTCAACACCGGGAGGAACAATCGCAACACTCTTGCACATTGTAGAATCGGTAACCGTGAATTAGAAGAGAAGGAGCAGCAGCAACAACAACCACAACAACACGCGCCACTGCTTAGGGTTTCGGAAGAAGATAAAGAGAAAGTGATGGATGACGAGTTCGACAGCGGCGGTGGCCGGAGCGCTGACAAGGCTGCGCCCGTCGAAGACGAAGGAAGCACTGCTCCCATTCCCGAGAGGGTACAGGTAGGTGGTTCTCCGTTGTACAAATTAGACAGAAAACTTGGGAAGGGAGGGTTTGGACAGGTTTACGTAGGTCGGCGAATTGTGGCTGGTGCCGGAGCGTTAGAGGTAGCTTTGAAGTTTGAACATAGAAGCAGTAAGGGGTGCAATTATGGACCTCCATATGAGTGGCAAGTTTACAACTCATTGGGTGGAAGTCATGGTGTTCCACGTGTTCATTACATGGGACGGCAAGGTGATTACTATATTATGGTTATGGATATGCTTGGCCCTAGTCTGTGGGATGTCTGGAATAACAACTCAAACACAATGTCTGCGGAAATGGTGGCATGTATAGCAATTGAGGCCATCTCCATATTAGAGAAGATGCATTCTAAAGGATATGTTCATGGTGATGTAAAACCTGAGAATTTTTTGCTTGGCACCCCGGGAACTGCTGATGAGAAAAAGCTTTTCCTGGTTGATCTTGGATTAGCAACCCGTTGGCGGGATAGTTCAACTGGCCTTCATGTTGAGTATGATCAACGTCCTGACGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGAAGCAGGAGAGATGATTTGGAATCTCTTGCTTACACATTAGTTTTCCTTCTTCGTGGTCGGCTACCTTGGCAAGGATACCAGGGAGAAAACAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCAACCTCACCAGAAGCTTTGTGTTGTGTCTGTCCGCCACCTTTCCGGCAGTTTGTGGAGTACGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAGTATATATCACTTTTTGATGGAATTGTTGGACCAAATCCAGACTTCAGGCCCATAAATACAGATGGTGCACAAAAGCTTATATATCTGGTTGGACATAAGAGGGGACGATTAACTGTGGAAGAAGATGATGATGAACAACCAAAGAAGAGAGTCAGAATGGGAATGCCAGCAATGCAATGGATTAGTGTGTACAATGCCCGCCGACCAATGAAGCAAAGGTACCATTACAATGTTGCTGATGTGCGGCTGTCCCAACACATTGAAAAGGGGTATGAGGACGGGTTATTTATCAGCAGCGTAGCTTGTTGTTCTAATCTCTGGGCACTTATTATGGATGCTGGCACTGGTTTCACTGCTCAAGTTCATGAACTCTCACCTCACTTTCTTCATAAGGAATGGATTATGGAACAGTGGGAAAATAGTTATTACATTAGTGCAATAGCAGGATCTACTAACGGGAGCTCATTCGTTGTAATGTCTAAAGGGACCCAATACTTGCAACAATCCTATAAAGTCAGTGAGTCATTTCCATTTAAGTGGATCAATAAAAAATGGAGAGAAGGATTTTCTGTCACTGCTATGGCCACTTCTGGGAGTAGATGGGCAATTGTAATGTCCCGTGGTGCTGGATATTCGGACCAGGTTGTGGAGCTTGATTTCCTATATCCTAGTGAAGGCATTCATCACAGGTGGGACAATGGCTACCGCATCACTTCAACTGCTGCTACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAAGAGACACTCCGCACATCTGCCTTTCCAAGTAGTCATGTCAAGGAAAAATGGTCAAAAAATCTCTATATTGCATCAATGTGCTATGGGAGAACAGTTTCATGA	2064	0.4525	MPELRSRRNRATLHDRNPNPNPNPNPNPKTRQRRTRRTTVNTGRNNRNTLAHCRIGNRELEEKEQQQQQPQQHAPLLRVSEEDKEKVMDDEFDSGGGRSADKAAPVEDEGSTAPIPERVQVGGSPLYKLDRKLGKGGFGQVYVGRRIVAGAGALEVALKFEHRSSKGCNYGPPYEWQVYNSLGGSHGVPRVHYMGRQGDYYIMVMDMLGPSLWDVWNNNSNTMSAEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGTPGTADEKKLFLVDLGLATRWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCVCPPPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDFRPINTDGAQKLIYLVGHKRGRLTVEEDDDEQPKKRVRMGMPAMQWISVYNARRPMKQRYHYNVADVRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVHELSPHFLHKEWIMEQWENSYYISAIAGSTNGSSFVVMSKGTQYLQQSYKVSESFPFKWINKKWREGFSVTAMATSGSRWAIVMSRGAGYSDQVVELDFLYPSEGIHHRWDNGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPSSHVKEKWSKNLYIASMCYGRTVS	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g00873	687	FunFam	casein kinase 1-like protein HD16	100	443	-	-
	Phco2g00873	687	ProSitePatterns	Protein kinases ATP-binding region signature.	133	159	IPR017441	GO:0005524
	Phco2g00873	687	SMART	serkin_6	127	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco2g00873	687	Gene3D	Transferase(Phosphotransferase) domain 1	102	415	-	-
	Phco2g00873	687	SUPERFAMILY	Protein kinase-like (PK-like)	127	403	IPR011009	-
	Phco2g00873	687	ProSiteProfiles	Protein kinase domain profile.	127	420	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco2g00873	687	Pfam	Protein kinase domain	127	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phco2g00873	687	MobiDBLite	consensus disorder prediction	77	105	-	-
	Phco2g00873	687	PANTHER	CASEIN KINASE-RELATED	120	655	-	-
	Phco2g00873	687	MobiDBLite	consensus disorder prediction	1	119	-	-
	Phco2g00873	687	CDD	STKc_CK1	127	396	-	-
	Phco2g00873	687	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g00873	Phco-Chr2	10450130	10454463	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Phco2g00873		Pkinase	4e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco7g00957	7	7763066	7769873	Phco2g00873	2	10450130	10454463	PCT