Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00830 ATGGCGCGAGTCATCGGCGGAAAGTATAAAATCGGTGAAAAAATTGGGAGCGGATCATTCGGTGAAATTCACATTGGGTCGCATATCGAGACTTCTGAAATCGTAGCCATCAAAATGGAGAACAGGAAAACCAATCAACCACAGCTATTGTATGAGTCCAAGTTATATAATATTCTTCAAGGAGGAAGTGGAATTCCAAGAATGAAATGGTGTGGTACTGATGGGGACAACAATGTTCTTGTTATTGAACTTCTGGGACCAAGTCTTGAAGATCTCTTTTTCTTCTGTGGGAATAAATTATCACTCAAAACAGTTTTGATGTTAGCTGATCAGATGCTTACAAGGATAGAATATTTGCACTCCAAAGGATTTCTGCATAGAGACATCAAACCGGATAACTTCCTTATGGGTCTTGGAAAGAAAGCAAATCAGATATACATGATTGACTTTGGACTAGCAAAAAGATATAGGGATCCTATCACAAATAAGCATATCCCTTACAGAGAGAACAAAGGCTTAACAGGGACTGCACGTTATGCAAGTTACAATACTCACTCAGGAATAGAGCAAAGTCGTCGAGATGATTTGGAGTCTCTTGGCTATGTTTTAATGTACTTTTTAAGAGGAAGTCTTCCATGGCAAGGTTTGCAAGCTGCCACCAAACAACAAAAGTATGACAAAATTTGCAAAAAAAAGTTATCAACGCCCATTGAGATACTTTGCAAGTCATATCCTGTGCAGTTTGCTTCTTACTTTCATTATTGCCGCTCTTTGACATTTGATCAACGACCAGATTATGCTCTTTTGAAGCGCCTATTTCGTAATTTGTTCACTCGTGCAGGATATGATTCTGACTATTTATTTGATTGGACTATTCTAAAATATCAACAGATGGAACAACAAAAGACACAAAGTCGACCAATTGCTCCACTGGCTGTGCCTACCAGTCTTGAACCAGTGGAGGAGGATAATAATAAAGGAGTCAATGATTCCACTCAAATTGATGTAGAAAGACCACCAATCAATGTTCAACGGGTTTTTAAAACAACAACATCTAATATTCAGAATCTTAATACCAAAATTCCATCAGAGAAACATACTGTGAACAATGGTTCATCTATGTCCACTGCAATGCCCAGAGTCTCCACAGAAAATGTGTCAAAACCAGTAAGGCTAGGAGCATCAAATGTGGGTCACGGATTTGGGAGTAAAATTGGTACTTCGGGAGGCATTGTTTCTTCACTACGCCGAGTTTCATCAACAAGAAAATAG 1272 0.3876 MARVIGGKYKIGEKIGSGSFGEIHIGSHIETSEIVAIKMENRKTNQPQLLYESKLYNILQGGSGIPRMKWCGTDGDNNVLVIELLGPSLEDLFFFCGNKLSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKANQIYMIDFGLAKRYRDPITNKHIPYRENKGLTGTARYASYNTHSGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAATKQQKYDKICKKKLSTPIEILCKSYPVQFASYFHYCRSLTFDQRPDYALLKRLFRNLFTRAGYDSDYLFDWTILKYQQMEQQKTQSRPIAPLAVPTSLEPVEEDNNKGVNDSTQIDVERPPINVQRVFKTTTSNIQNLNTKIPSEKHTVNNGSSMSTAMPRVSTENVSKPVRLGASNVGHGFGSKIGTSGGIVSSLRRVSSTRK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00830 423 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00830 423 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Phco2g00830 423 Gene3D Transferase(Phosphotransferase) domain 1 1 338 - -
Phco2g00830 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Phco2g00830 423 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00830 423 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Phco2g00830 423 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00830 423 FunFam CK1 family protein kinase 1 325 - -
Phco2g00830 423 PANTHER CASEIN KINASE-RELATED 7 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00830 Phco-Chr2 9546929 9570817 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Phco2g00830 Pkinase 2.4e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00920 7 7415724 7422816 Phco2g00830 2 9546929 9570817 PCT