Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00798 ATGAGAAACCCTTCATCAACATCAACAACTAAGAACAAGAAGAGTGGTGGTAACAGCACTGCTACCAGCTGCAGCAACAACAGCAACAGCAACATTGGAGGCAGCAGCAATAACAATACTACCAACAACAACACTCCATGCTGCACCAAGGTTGGGTTGAAGAGAGGACCATGGACACCAGAAGAAGATGAGGTGTTAGCCAATTACATTAAGAGAGAAGGAGAAGGGCGCTGGAGAACTCTCCCCAAGCGAGCTGGCCTTCTCCGCTGCGGCAAAAGCTGCCGTCTCCGATGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTTCACCGCCTCCTTGGCAACCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAATACCCATCTAAGTAAAAAACTCATTAGCCAAGGGATTGATCCCAGAACTCACAAGCCTCTCAACCCACCATCCATTAATATTCCTTCTTCTTCTACTACTACTTTCACTGTTCCTCCACCCTCTTTGCCTCCTCCAATGATCATCGCCACCCACAACCCTTGTCATGATCTCACTGCTGTTGACCAAGGAATTCATGCGATTCATCATTTGGGTCAACATCACCAACCTCCGGTCTCAAACCCCTTTGATAACAACAACATTAACAATCAAGTGGCTGCTGTCACAGATGATGTTTCTGCAATGGGGTTCATGGACAGCGAGGATTGCAACTATGATATCAACATCAATTATTACTCAGATGATGCTTTTTCTTCCTTCCTCAACTCCTTGATCAATGATGATGCTTTTGCGTCGCAACAGCACCACGTGCAAACAGAGCTCCCCAGTGAGCGTTGCATTCCACTGCCATGTGATGATCGTGTGGATGATCCTCTGGTTTCAATTACCACTGCTTCTACATCGCAGGGTTATGATGATGACCTTGGGGTTCTGTGGGAATCGCCTCTCGTGCCTTCTACAACTTTCAGCCATCACGTTAACGACCCCATCATCAAGATGGCTCATGATCACCATCACCTCAATCAATAG 1098 0.4772 MRNPSSTSTTKNKKSGGNSTATSCSNNSNSNIGGSSNNNTTNNNTPCCTKVGLKRGPWTPEEDEVLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSINIPSSSTTTFTVPPPSLPPPMIIATHNPCHDLTAVDQGIHAIHHLGQHHQPPVSNPFDNNNINNQVAAVTDDVSAMGFMDSEDCNYDININYYSDDAFSSFLNSLINDDAFASQQHHVQTELPSERCIPLPCDDRVDDPLVSITTASTSQGYDDDLGVLWESPLVPSTTFSHHVNDPIIKMAHDHHHLNQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00798 365 ProSiteProfiles Myb-like domain profile. 103 153 IPR001005 -
Phco2g00798 365 SMART sant 107 155 IPR001005 -
Phco2g00798 365 SMART sant 54 104 IPR001005 -
Phco2g00798 365 SUPERFAMILY Homeodomain-like 52 149 IPR009057 -
Phco2g00798 365 CDD SANT 113 153 IPR001005 -
Phco2g00798 365 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Phco2g00798 365 Gene3D - 112 173 - -
Phco2g00798 365 FunFam Myb transcription factor 52 108 - -
Phco2g00798 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 157 IPR017930 -
Phco2g00798 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 102 IPR017930 -
Phco2g00798 365 Gene3D - 52 108 - -
Phco2g00798 365 MobiDBLite consensus disorder prediction 1 43 - -
Phco2g00798 365 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 45 178 - -
Phco2g00798 365 FunFam transcription repressor MYB5-like 112 178 - -
Phco2g00798 365 Pfam Myb-like DNA-binding domain 113 153 IPR001005 -
Phco2g00798 365 Pfam Myb-like DNA-binding domain 55 102 IPR001005 -
Phco2g00798 365 CDD SANT 57 102 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00798 Phco-Chr2 8856490 8857709 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00798 Myb_DNA-binding 7.2e-14 CL0123