Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g00797 | ATGTATCGATCTTCAAATTGCAACTCTTACTTGATTACTGTTTCAACGTGCAATCGAATCATGTCGAGGATTTGCGTGAAGAATCTTCCGAAACATGTCGCTGAAGATGAACTACGGGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTTAGGCTCATGCGTACCAAAGATGGTAAGAGTCGGCAATTTGCGTTTATAGGGTATCGAACCGAAAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTATCTTCGCACATCTAAAATTGCATGTGAGGTAGCACGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGGGTCGCCATTCGAAGAAGAAAGATGAGAAAGGGACTGCATCGAATGTGGGGAAACCTGCTAGAGCTAAGGGACGGCAAGAAAATTTGAAGGACGGTGTGGATTTTGATGATCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTCGGGTGAACTCTAAGATGTGGGCAAATGATACGTCCGGTTTGACCAGTGTTGGTAACAACCAAGTAGTCTCGAATAAGGATAATGAAGGTGCCTCAGTTTCAACTGATGACAGTGGCTTATTAGAAGATGAATTTCTGGACATTTCTGAACCCAGCAGCAAGTCACCTCAGCCTGAAGGTAACGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACGACAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATGATGACGATAGCAATGATAATGATGCCTCATCTGTTGACAATGATGACAAAGATGATAATAGTGGGGTTACTGAAGATGAAAAAAATAGTGATCCGAGAAAGGATACTCGAGAGGTAGACCTGAAGGGAAAAGAAGATACTAGTGGAGAGGATGTTACCCATGAGAAGGCTCAAGTAAATGTGACTGAGCACAGGGGGCAATTATCAAAAACAGAAGACGGGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGAAATCTGCCATACACCACCACTGAGGAGGAACTGGAAGAACATTTCAGTCACATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATAGCATATATTCTTTATACATCTCCAGAATCTGCAGCCAGGGCTCAGAAAGAGTTAGACAATTCAATCTTTCAAGGCAGATTGTTGCATGTAATGCAAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAAAAGAAGAGAGAGGAAAAAAGGAAAGCAAATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTATTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAATTTGGTGTTGATAAAAGTGATTTACTTGACCGAGAAGCAGATGATCTTGCCGTACGTATTGCTCTAGGAGAGACTCAAGTGATATCAGAAACAAAAAAGGCATTTAAAAATGCTGGTGTAAATGTGGAGGCCTTGGAGGAACTTGCTAACAATAAAATAGATGGCTTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCGCTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCGTTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAACAATAATGACATGAATGGTGCAATTGGTGAAAACGATGCCAAGAGGCAGATATTGCAGCAACATGTGGAAAGAATAACAGATGTAGATATTGATCCAGACAGAGTAGAGGCTCGGTCACTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAACTCTGAGGAAACATTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCTCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACGGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAACAAAAGGCAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAACCCATTTGGCCAGATTAAAAGCTTGAGGTTGCCAACGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACTCAGCAGGAAGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTATGGGAGACATCTGGTGATAGAGAGAGCCAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTGCTCAATTCAGTGACGATCACAATGGATTTCAAGGTGCTGTTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGGTTTACTGACTAG | 2604 | 0.4086 | MYRSSNCNSYLITVSTCNRIMSRICVKNLPKHVAEDELREFFSEKGIITDVRLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSYLRTSKIACEVARKLGDENLPRPWGRHSKKKDEKGTASNVGKPARAKGRQENLKDGVDFDDPQLQDFLQVMQPRVNSKMWANDTSGLTSVGNNQVVSNKDNEGASVSTDDSGLLEDEFLDISEPSSKSPQPEGNEVISDMDYFKSRVTTEWSDSESSDEDDDDSNDNDASSVDNDDKDDNSGVTEDEKNSDPRKDTREVDLKGKEDTSGEDVTHEKAQVNVTEHRGQLSKTEDGKGVFESCRLFVRNLPYTTTEEELEEHFSHIGSVSQVHLVVDKDTKRSKGIAYILYTSPESAARAQKELDNSIFQGRLLHVMQALQRHSENQENNVLKDQSSKTLKKKREEKRKANEASGDTRAWNSLFMRPDTIVENIARKFGVDKSDLLDREADDLAVRIALGETQVISETKKAFKNAGVNVEALEELANNKIDGLKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSNNNDMNGAIGENDAKRQILQQHVERITDVDIDPDRVEARSLFVKNLNFKTTDETLRKHFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDGHALILQPCHVKNDGQKQKAIEKDKSSTKLLVRNVAFEATEKDLRRLFNPFGQIKSLRLPTKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDDHNGFQGAVKLSKKRKDVDILDEGKMKFGRFTD | 867 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 407 | 438 | - | - | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 255 | 316 | - | - | |
| Phco2g00797 | 867 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 521 | 593 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | SMART | rrm1_1 | 522 | 589 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | SMART | rrm1_1 | 642 | 720 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | SMART | rrm1_1 | 327 | 400 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | SMART | rrm1_1 | 742 | 813 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | SMART | rrm1_1 | 23 | 95 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | CDD | RRM4_RBM19_RRM3_MRD1 | 521 | 592 | - | - | |
| Phco2g00797 | 867 | CDD | RRM1_MRD1 | 22 | 97 | - | - | |
| Phco2g00797 | 867 | Gene3D | - | 735 | 838 | IPR012677 | - | |
| Phco2g00797 | 867 | Gene3D | - | 503 | 614 | IPR012677 | - | |
| Phco2g00797 | 867 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 22 | 99 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | SUPERFAMILY | RNA-binding domain, RBD | 321 | 407 | IPR035979 | GO:0003676 | |
| Phco2g00797 | 867 | Gene3D | - | 231 | 413 | IPR012677 | - | |
| Phco2g00797 | 867 | SUPERFAMILY | RNA-binding domain, RBD | 22 | 105 | IPR035979 | GO:0003676 | |
| Phco2g00797 | 867 | Gene3D | - | 17 | 142 | IPR012677 | - | |
| Phco2g00797 | 867 | Gene3D | - | 615 | 734 | IPR012677 | - | |
| Phco2g00797 | 867 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 327 | 427 | - | - | |
| Phco2g00797 | 867 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 741 | 817 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | CDD | RRM6_RBM19_RRM5_MRD1 | 741 | 815 | - | - | |
| Phco2g00797 | 867 | FunFam | RNA-binding motif protein 19 | 21 | 120 | - | - | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 167 | 316 | - | - | |
| Phco2g00797 | 867 | SMART | rrm2_1 | 327 | 400 | IPR003954 | GO:0003676 | |
| Phco2g00797 | 867 | SMART | rrm2_1 | 23 | 95 | IPR003954 | GO:0003676 | |
| Phco2g00797 | 867 | SMART | rrm2_1 | 642 | 722 | IPR003954 | GO:0003676 | |
| Phco2g00797 | 867 | SUPERFAMILY | RNA-binding domain, RBD | 518 | 610 | IPR035979 | GO:0003676 | |
| Phco2g00797 | 867 | Coils | Coil | 416 | 436 | - | - | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 104 | 123 | - | - | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 167 | 193 | - | - | |
| Phco2g00797 | 867 | FunFam | - | 296 | 443 | - | - | |
| Phco2g00797 | 867 | SUPERFAMILY | RNA-binding domain, RBD | 640 | 818 | IPR035979 | GO:0003676 | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 239 | 254 | - | - | |
| Phco2g00797 | 867 | CDD | RRM5_RBM19_like | 642 | 720 | IPR034423 | - | |
| Phco2g00797 | 867 | FunFam | Multiple RNA-binding domain-containing protein 1 | 512 | 614 | - | - | |
| Phco2g00797 | 867 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 641 | 724 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 326 | 404 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | FunFam | Nucleotide/nucleic acid binding protein | 637 | 732 | - | - | |
| Phco2g00797 | 867 | FunFam | Multiple RNA-binding domain-containing protein 1 | 735 | 841 | - | - | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 418 | 437 | - | - | |
| Phco2g00797 | 867 | MobiDBLite | consensus disorder prediction | 104 | 145 | - | - | |
| Phco2g00797 | 867 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 24 | 92 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 523 | 584 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 328 | 398 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 643 | 717 | IPR000504 | GO:0003723 | |
| Phco2g00797 | 867 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 743 | 810 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g00797 | Phco-Chr2 | 8830076 | 8839758 | Dispersed/Transposed |