Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00782 ATGGGGAGGGGAAAGATTGAGATCAAGAGGATCGAGAACTCGAGCAACAGGCAAGTTACCTACTCTAAGAGAAAGAATGGGATCCTAAAGAAGGCTAAGGAAATCACTGTTCTATGTGATGCACAAGTTTCTCTTATCATCTTCGCTGCATCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATATTGGAGAGGTACCACAAGACATCAGGGAAGAGGCTTTGGGATGCCAAGCATGAGAACCTAAACAGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGCACTTGAAGGGGGAAGATATAAACTCTCTGAACTACAAGGAACTCATGGCCTTAGAAGATGCCTTAGAAACTGGTCTCGTCAGTGTTCGTGAGAAACAGATGGATGTGTACAGGATGTTCCGGAGAAATGACAAAATCTTGGAGGAGGAGAACAGGGAACTTAATTTTCTCTGGCAACAACGTTTGGCAGTGGAAGGAGCAAGAGAAGTGGAGAACGGGTTTGATGAGAGCGTGAGGGATTACAATTCCCATATGCCATTTGCCTTTCGTGTGCAGCCTATGCAGCCAAATCTTCAAGAAAGGATCTGA 627 0.4482 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNSEIERLKKENDSMQIELRHLKGEDINSLNYKELMALEDALETGLVSVREKQMDVYRMFRRNDKILEEENRELNFLWQQRLAVEGAREVENGFDESVRDYNSHMPFAFRVQPMQPNLQERI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00782 208 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Phco2g00782 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco2g00782 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco2g00782 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Phco2g00782 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco2g00782 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Phco2g00782 208 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco2g00782 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Phco2g00782 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco2g00782 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco2g00782 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco2g00782 208 Coils Coil 77 111 - -
Phco2g00782 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco2g00782 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00782 Phco-Chr2 8654916 8657861 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco2g00782 K-box 5.7e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00782 2 8654916 8657861 Phco2g00782 2 8654916 8657861 ECH
Phco2g00782 2 8654916 8657861 Phco7g01298 7 11638644 11641746 PCT