Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00775 ATGAAAATGTTGCCAACTTCCACCGCCGGGGAGGCCAGCCACGGTGGCCGGACGGTGGTCGTGGGAGTGAAGATGGACTCACACAGCACCGAGTTGCTCACTTGGGCTTTGTTCAAAGTGGCTCAGCCCTGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTTAATCGAGATGGGAAATCGTCTTTATTTTCACTTGTCAAAGCGTTTGACTCTGTGCTTGCTGTTTACGAAGGGTTCTGCAATTTGAAACAGGTGGATCTTAAATTCAAAATATGTCGGGGTTCATCAGTGAGGAGAATCCTGGTTCGAGAAGCAAATGCTTATTCTGCAACGCACATGATTGTTGGAAGTCCTCAAGGTCTTCATAGGATTCGGCCATGTATATCTGTGGCAAGGTACTGTGCTAGGAAGCTACCAAAGGATTGTTGGGTTCTTGCTGTTAATAATGGGAAAATTGTGTTCAAGAGAGATGGTTCACCCGCAACTCTAGCCGACATGAAAGGAGTTGATCAGAACCCCACAACTGGGGTGCTTTGTTCGATTCACAGGACACTTGGCAAGACTTCAAAAGTGTTAGATGATGATGGTACCGGGATGCAGGAAAAGGGTTCTGGTCAATTTTCAGATCACAGTTTGGCTAAGGCTTTTCTGGATTCTAAAGAATTCATTGAGAAGAAGAGTTGCTCTATTTGTTCTTCAAACCCAGCACTGTTTGGTTTATGTTGTAACCATTCAGAAGAAGAGTCTTGTGGTGATGCTTGTCATGAGAACCCTTTGGCAATAGTGTCTGTGCAGACCAATGATTCTGCTTCTAAACCAGGTTGGCCACTGCTTCATAGGACAATTATATCTGACAGAAAATGCTCTGAAAGATCGCCGTTTCACCAGATCTCTGTAGTACAATGGGCAATGCAGTTACCTTCTAGAGATCTTTCATATGCTGCACATCTTGTTCAAAAAACAAACTATTGTGGCCCAAATAAGGATGAGTTTTTGGCTCTAGATAGCAAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAAATAGGGACTGCCTCTTTGCCTGACCACAACTCGAGAAGCATTCCTAAGGAATTGGAGGGCCTTCATGAGAAATACTCATCCAGTTGCAGATTGTTTAAGTACCAAGAACTTGTATTGGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTATACAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCATCTGATGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACCTTGCATCACAAAAACATTATTTCCCTCCTTGGATTCTGCTTTGATGATGGTAATCTTCTCTTGGTCTATGATTTTTTATCAAGAGGAAGCCTTGAAGAGAACATCCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACCGAGAGATACAAAGTGGCAGTGGGTGTTGCAGAGGCTTTGGATTATCTCCATAATAATGAAGGCCAATCTGTGATCCATCGCGATGTAAAATCATCAAATGTTTTGTTATCTGAGGATTTTGAACCCCAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAATCTGCACAGATGTTGCTGGAACCTTTGGGTACATGGCTCCTGAGTACTTCATGTATGGCAAAGTAAATGACAAGATCGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTTCTTTCAGGAAGAAAGCCCATAAGTAGTGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAATCCAATTCTAAATAGTGGGAAGGTATTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCCTGAAGAGATGGAAAGGATGGTCTTGGCAGCTACACTTTGTATCAGACGTGCTCCAAGAGCTAGACCACCAATGAGCCTTATCTCAAAGCTCCTTGGAGGTGATGGTGAAGTGATGAAGTGGGCAAGAGTAGAAGTTAATGCTGTGGAAGCAGCAGAAATGCTTGATGATGAAGCTTGTTCACCTTCCAATCTGCAGTCACACCTTAACCTTGCTCTGCGTGATGTGGAGGATGACTCCCTCTCCATGTGCAGTGTTGAGCAAAACGTGTCATTGGAGGACTACTTGAGAGGGAGGTGGAGCCGTTCATCAAGCTTTGATTAA 2229 0.4325 MKMLPTSTAGEASHGGRTVVVGVKMDSHSTELLTWALFKVAQPCDVVLALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKFKICRGSSVRRILVREANAYSATHMIVGSPQGLHRIRPCISVARYCARKLPKDCWVLAVNNGKIVFKRDGSPATLADMKGVDQNPTTGVLCSIHRTLGKTSKVLDDDGTGMQEKGSGQFSDHSLAKAFLDSKEFIEKKSCSICSSNPALFGLCCNHSEEESCGDACHENPLAIVSVQTNDSASKPGWPLLHRTIISDRKCSERSPFHQISVVQWAMQLPSRDLSYAAHLVQKTNYCGPNKDEFLALDSKSGALVPVDAEIGTASLPDHNSRSIPKELEGLHEKYSSSCRLFKYQELVLATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFDDGNLLLVYDFLSRGSLEENIHGNKKNPLVFGWTERYKVAVGVAEALDYLHNNEGQSVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHIICTDVAGTFGYMAPEYFMYGKVNDKIDVYAFGVVLLELLSGRKPISSDYPKGQESLVMWANPILNSGKVLQLLDPSLGDNYDPEEMERMVLAATLCIRRAPRARPPMSLISKLLGGDGEVMKWARVEVNAVEAAEMLDDEACSPSNLQSHLNLALRDVEDDSLSMCSVEQNVSLEDYLRGRWSRSSSFD 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00775 742 PANTHER OS08G0249100 PROTEIN 242 678 IPR046958 -
Phco2g00775 742 ProSiteProfiles Protein kinase domain profile. 396 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00775 742 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Phco2g00775 742 Pfam Protein kinase domain 400 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00775 742 Gene3D HUPs 16 153 IPR014729 -
Phco2g00775 742 SUPERFAMILY Protein kinase-like (PK-like) 377 665 IPR011009 -
Phco2g00775 742 SMART serkin_6 396 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00775 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Phco2g00775 742 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 16 153 - -
Phco2g00775 742 Pfam Universal stress protein family 17 149 IPR006016 -
Phco2g00775 742 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Phco2g00775 742 CDD USP_Like 18 149 - -
Phco2g00775 742 Gene3D Phosphorylase Kinase; domain 1 361 470 - -
Phco2g00775 742 Gene3D Transferase(Phosphotransferase) domain 1 471 681 - -
Phco2g00775 742 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 365 470 - -
Phco2g00775 742 CDD STKc_IRAK 402 661 - -
Phco2g00775 742 FunFam Putative receptor-like serine/threonine-protein kinase 471 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00775 Phco-Chr2 8472119 8475637 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco2g00775 Pkinase 2.3e-43 CL0016