Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00766 ATGATTCGTCCTAAAATTAGTTGTGCCACTACAATGCCGGAAACTTTTAAAATTGACTATAATGGGCAAGAATGCTCTCCAGAATTAGAGTGTTTGCTTCATAGATTACAGACTGAAGCTAATGGGCAAGAAAATTCTGTACATGATGGATTTTCTAGCAAGTCAGATCTCCATGGTGCAACTAAAAGGTGTCAGCGTGTGTTCTGCGATATCTTAGCCTCCGAGAAGTTCAGTTTATTATGTAAAATACTGCTTGAAAATTTTCAAGAAATGAAACCTGAAACTGTATTTGACTTTAGCCTGATAAACTCAAGGATGAAAGAGCACGCTTATGAACAATCACCTACACTTTTCTTATCCGATCTTCAACAGGTTTGGCAAAAGCTTCAAAATACTGGTCATCAGATTGTTGCTATAGCCAGGAGCCTCTCCAACCTGTCAAAAGCTTCCTTCTGTGAGCGGGTAAAGAAAACTCATGTGGGGATTTCAGCGCAGAGATCCTTTGAAGACGAAAAGCAAGTGGAATCAATCTCTCACATGAAGCCAGAGAAGAGAGTAGCGTGTGTTGCATTCAAAACTGGCAGTTGCAGGCACTGTGGAGACAAAGCAGACGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATTGAGCCTGCTGTGAAAGAAATACCCTGCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGAGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCAAAGACACTGGACAACATTGTTGGCAAGGAAAGCCTCCCTACAAAAGAGGAAAAACCGAATGAGTTGGAAGAGAATTCAAATTGTACTTGTGATGGGATTCCAGTTTCCATAGGTGGGAGACATCCATCTGTCTGCAAAACTTGTAAAATGGCGGTGCGTGGTGGAAAAATAAAAATCTGTGGTCACTTATTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGCTTAAGACATACGGTCACTGTTGGTATTGCCCTTCTTGTATTTGCCAAGTCTGCTTCACTGACAAAGATGATGATAGGATTGTACTCTGTGATGGCTGTGATCATGCATACCATGTGTACTGTATGAAACCTCCGCTAAATTATATTCCTACAGGGAAATGGTTCTGCATAAAATGTGAACCCGGGATACTAGTAATACGCCAGGCAAGGAAGGCATACGAGAGCAAGAAAGGGAAAATTGGTCAGAATGATTTAAAGCCAAATGAAGAAATTGACCAGAAATGGAACAGAAAACGTGGACGGGAAACCGACACAGTCGGAGGAATGGACATGCTTATAAATGCAGCAAATACTCTGAATTTTGAAGAGAACATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACATAA 1434 0.4114 MIRPKISCATTMPETFKIDYNGQECSPELECLLHRLQTEANGQENSVHDGFSSKSDLHGATKRCQRVFCDILASEKFSLLCKILLENFQEMKPETVFDFSLINSRMKEHAYEQSPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVKKTHVGISAQRSFEDEKQVESISHMKPEKRVACVAFKTGSCRHCGDKADGVDCLVCDSCEEMYHLSCIEPAVKEIPCKSWFCANCTARGIGCQHENCVVCERLNVPKTLDNIVGKESLPTKEEKPNELEENSNCTCDGIPVSIGGRHPSVCKTCKMAVRGGKIKICGHLFCPSKYYHVRCLSSKQLKTYGHCWYCPSCICQVCFTDKDDDRIVLCDGCDHAYHVYCMKPPLNYIPTGKWFCIKCEPGILVIRQARKAYESKKGKIGQNDLKPNEEIDQKWNRKRGRETDTVGGMDMLINAANTLNFEENMNAIQIESERTLT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00766 477 SUPERFAMILY FYVE/PHD zinc finger 354 406 IPR011011 -
Phco2g00766 477 ProSiteProfiles Zinc finger PHD-type profile. 352 402 IPR019787 -
Phco2g00766 477 Gene3D - 82 243 - -
Phco2g00766 477 SMART PHD_3 195 241 IPR001965 -
Phco2g00766 477 SMART PHD_3 305 354 IPR001965 -
Phco2g00766 477 SMART PHD_3 357 400 IPR001965 -
Phco2g00766 477 FunFam PHD finger protein EHD3 isoform A 82 244 - -
Phco2g00766 477 SUPERFAMILY FYVE/PHD zinc finger 179 242 IPR011011 -
Phco2g00766 477 ProSiteProfiles Zinc finger PHD-type profile. 193 243 IPR019787 -
Phco2g00766 477 Pfam PHD-finger 196 242 IPR019787 -
Phco2g00766 477 Pfam PHD-finger 354 401 IPR019787 -
Phco2g00766 477 ProSitePatterns Zinc finger PHD-type signature. 196 240 IPR019786 -
Phco2g00766 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 403 IPR013083 -
Phco2g00766 477 PANTHER OS02G0192300 PROTEIN 109 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00766 Phco-Chr2 8354056 8359463 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco2g00766 PHD 7.7e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00766 2 8354056 8359463 Phco2g00766 2 8354056 8359463 ECH
Phco2g00766 2 8354056 8359463 Phco7g01306 7 11720328 11726900 PCT