Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00747 ATGGACAATTCTACTGCAGCTTATGAGAACTTGCCCTATTATCGTGTTAATCACTGGAGGGAAGATGAGGATGAAAAGCTAATCCAACTTGTTCAAGAACATGGTCCCCAACACTGGAATGCAATTGCTCAACATATACAAGGACGATCTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTAGTCCTGGAGTTAACAGAAACCCTTTTAGCAAAGAAGAAGAAGAGAGGCTAATTGCAGCTCGCGAGTTTTATGGGGCAAAGTGGGCAACCATATCCAAACTCTTCGACGGGAGAACCGATAATGCCTTGAAAAACCGTTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGCCAACAATGAAAGTTTGCAAGAGCTGGTCAACGCTTCAAGCTCTTCCTGCCCCTGCAACACTCCTCATCATGACACATTCTTTCACATGAGGAACTCTGCACAAACTGCACTTGCACCAGTGTGTCCCAGTGCTTCGTTGAGCCCTGTCAACTTTGGATCAGTACCATCCTTCTCAGAATCTTTTCCTGGGAAGGAAGGGAGTGATCCTTTCGGGCTGTTGAATCCTGCTGCTGCTGCTGCTTCTGGAAGGATGGAAAAGGGCTTGTTTCATAGCTCATCATCAGCTTTCACTGACTTTAAGGGTTCTTCTTCCTCGGAGAAAAACCAAGCACATGACGCTGAATTCAAAGATGTTACTTTCTATGATTTTCTTGGTGTCGGTTCTGATGATGATGAGTGA 759 0.4532 MDNSTAAYENLPYYRVNHWREDEDEKLIQLVQEHGPQHWNAIAQHIQGRSGKSCRLRWRNHLSPGVNRNPFSKEEEERLIAAREFYGAKWATISKLFDGRTDNALKNRWHVLIARKRKEANNESLQELVNASSSSCPCNTPHHDTFFHMRNSAQTALAPVCPSASLSPVNFGSVPSFSESFPGKEGSDPFGLLNPAAAAASGRMEKGLFHSSSSAFTDFKGSSSSEKNQAHDAEFKDVTFYDFLGVGSDDDE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00747 252 SMART sant 15 64 IPR001005 -
Phco2g00747 252 SMART sant 67 115 IPR001005 -
Phco2g00747 252 Gene3D - 17 67 - -
Phco2g00747 252 FunFam MYB transcription factor 17 67 - -
Phco2g00747 252 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Phco2g00747 252 Gene3D - 69 135 - -
Phco2g00747 252 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
Phco2g00747 252 CDD SANT 19 62 IPR001005 -
Phco2g00747 252 Pfam Myb-like DNA-binding domain 19 79 - -
Phco2g00747 252 PANTHER MYB PROTEIN-RELATED 18 135 - -
Phco2g00747 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Phco2g00747 252 CDD SANT 70 113 IPR001005 -
Phco2g00747 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 66 IPR017930 -
Phco2g00747 252 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00747 Phco-Chr2 7989489 7991331 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00747 Myb_DNA-bind_6 1.6e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00747 2 7989489 7991331 Phco2g00747 2 7989489 7991331 ECH
Phco7g01725 7 17331408 17332464 Phco2g00747 2 7989489 7991331 PCT