Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00715 ATGGACGGTGAACGGAGCATGCCTGCTCCATCTTATGGGCAAGTTGACGGGGCTCAGAAAGTTAAAGCATTGCATGGGAGGACCACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACATTAGAGGAGGATGATATCTTACGGAAGGCGGTTGAGAAATTTAAGGGAAAGAATTGGAAAAAAATTGCGGAATGTTTCAAGGAAAGGACTGATGTGCAATGCCTGCATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGACATAATTATTGAATTGGTGAATAAAAATGGGGCTAAAAAGTGGTCGTCTCTTGCACGACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAAGCATGGACTCAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATATGGGAACAAATGGGCAGAGTTGTCAAAGTACATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTATTTGACATCTGGTGTGCTTAATCAGTTTGAGCCTGTACCTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCAGTGTAGTGGTGATGATAATTGTTCCAAGAGGATGGAAGGAGAAGAAGTTTCGGAGTCCAGCCAAGGTTCAGCTAATGCTGTTCGCTTTCCATCTGCTAGAGGGATGGGCAGTGCTGAATTACAAACTGGAGAGGCGGCGTGTAGGCCAAATGAAGAATGTAATTTCGGAAAGGATCATAGTCCAAGTCGAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATATATGCATTCCTGAAATTTCTCACCAAGAGGCATGCACTTCTCAGTTCACTGAGCAATACTCACATGAACCTGGAAATTCCATAAGTGGGGATTGCCATTTCAATTTACATTCCTTACCCAATATTTCATCAATGGTCTTGGGGCAGGATTCCTCACAGTTGCAAAGAGATTGTGTAGCTTCTAGTGAAATCTGTGACATAGTGAATGTTCCATTTCAGACTTCAGAGGGGTTGGGTGTTTCAACGTCCATGGGACCGGCATCTTTGGATTCTCTTAAATCAGATCATGTGTTGATATCTGATGATGAATGTTGCAGAGTTCTGTTTTCAGATTCAATGAATGATGGTTGTTTCCCCCCTGTAGATTATATTAAAGGTGAAGATACAGTTGAATTTTCTGGATGTACTTCATTTCCTTGCCAATCTTGTAATATCCAGATGGCTGAAACTGGTGGAACCTCAACTCCTCAGTTAACTTGTCCTCGATGTTCTAATAATTATCAAGGAACTTCGTCCTCCCTGTCTTTCCCTCCAGTACTTTCTGCTTGTGATGATAGGGAGGTGCCAACTGCCAATGGCAATCATTTATTTGGAACAAATGGTCACCAGTTGGTCTCCAGAGCACCTGCTACCTTCAGTTATGTCAATTACATATCCAGTTCTCCCTGTATGGATGACATGGGTACAGCAGTAATGGAAGAACCACATGATATTCTGAATGGTACTTCAGAAGAAAAGACAAATGTGCATACAGAAAAGGAGGACTCTGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAGTCTGGGATTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTCAGGTTGTGGGACTCACCCTCTCATGGTGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCTATATTAAAGAAACGACACCGAGATTTATTGTCACCGCTCTCAGATAAAAGAATTGACAAGAAACTTGAGACTGACATGACTACCAAAAACATTTCCAGTTTGGATGTCATGTTTGGTGACAATGAGACTCAAGAAGCAGACATGCCTTCATTTAAAAAACAGAGCAGCAGTGCATGTGTTGATGATAATAAAGAAAATTGCGAACAAGCTTATAAGCCAATTAAATATGCAATTTTCGATGAAAAGAACTCCCTCAAAAATACTGTAGACAATTCAAAGCCTAATGTAAAGCAACAGCAACTAAAGAGTGAAGCATCAGCTGCTGCGATGGAACAAGAACCTTCTGGAGTTTTGGTTGAACATGATGTGAATGACCTGACGCTGTCTTCTCCTGATCAAGTTGGTTCAAAATCAAACAGAGGTCTAGGTTCAAGTACTAAATCACCCAAAAGCATGAACAGGTCCTTGGAAGCAGTTCCAAATCAGAACAGCCATTTGAAATTATCTTCTAAAAATCCACGCTCAAGGATTAATTCTAATTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAAGCTTTCAGTTGCTGTTACTCGTGTACAAGCTCCAGGGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCATATTCGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCTGCATGGAAATCTCCTTGGTTCTTCAATACTTTTTTATGTAGCCCCAGACTTGGTACTGAACTTACAGTTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTAAAACAGATCAGTGAACAAACTGCTGCTACATATGCCAATGCTAAAGAGGTTTTGGGAAATGAAACTCCTAAGGCAGCATTACGGAAAGATGCATCTGGAAACGAGGAGGATAAGTACCATGGTTCCCCGAATCAGCCTGGGAATGATTCTCAATTGGCTTCAAATGCATTGATAGAGCGACGCACACTTGACTTTAGCGAGTGTGGATCACCAAGCAAGGGTGATGACAACAAATCCTCAGCTATAAGTTTCCCAAGCCCTTCTGCTTATCTGTTGAAAGGTTGTAGATGA 3015 0.4119 MDGERSMPAPSYGQVDGAQKVKALHGRTTGPTRRSTKGQWTLEEDDILRKAVEKFKGKNWKKIAECFKERTDVQCLHRWQKVLNPELVKGPWSKEEDDIIIELVNKNGAKKWSSLARHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIHYHQIYGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGVLNQFEPVPHVGNSNQSTRLQCSGDDNCSKRMEGEEVSESSQGSANAVRFPSARGMGSAELQTGEAACRPNEECNFGKDHSPSRASCSEPYYVSIDDICIPEISHQEACTSQFTEQYSHEPGNSISGDCHFNLHSLPNISSMVLGQDSSQLQRDCVASSEICDIVNVPFQTSEGLGVSTSMGPASLDSLKSDHVLISDDECCRVLFSDSMNDGCFPPVDYIKGEDTVEFSGCTSFPCQSCNIQMAETGGTSTPQLTCPRCSNNYQGTSSSLSFPPVLSACDDREVPTANGNHLFGTNGHQLVSRAPATFSYVNYISSSPCMDDMGTAVMEEPHDILNGTSEEKTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGIDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSHGDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLETDMTTKNISSLDVMFGDNETQEADMPSFKKQSSSACVDDNKENCEQAYKPIKYAIFDEKNSLKNTVDNSKPNVKQQQLKSEASAAAMEQEPSGVLVEHDVNDLTLSSPDQVGSKSNRGLGSSTKSPKSMNRSLEAVPNQNSHLKLSSKNPRSRINSNSPCVRAKEHEKLSVAVTRVQAPGDNSGEQTRKDGGFETCSIFGGTPFRKGLESPSAWKSPWFFNTFLCSPRLGTELTVEDFGYLMSPGDRSYDAIGLLKQISEQTAATYANAKEVLGNETPKAALRKDASGNEEDKYHGSPNQPGNDSQLASNALIERRTLDFSECGSPSKGDDNKSSAISFPSPSAYLLKGCR 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00715 1004 CDD SANT 91 135 IPR001005 -
Phco2g00715 1004 Gene3D - 142 202 - -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 946 965 - -
Phco2g00715 1004 PANTHER MYB PROTEIN-RELATED 37 122 - -
Phco2g00715 1004 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 716 736 - -
Phco2g00715 1004 Gene3D - 89 140 - -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 205 246 - -
Phco2g00715 1004 FunFam Transcriptional activator Myb isoform A 36 88 - -
Phco2g00715 1004 FunFam Transcription factor MYB3R-2 142 204 - -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 980 994 - -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 1 38 - -
Phco2g00715 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Phco2g00715 1004 SMART sant 88 137 IPR001005 -
Phco2g00715 1004 SMART sant 140 188 IPR001005 -
Phco2g00715 1004 SMART sant 36 85 IPR001005 -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 757 813 - -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 716 744 - -
Phco2g00715 1004 FunFam Transcriptional activator Myb isoform A 89 141 - -
Phco2g00715 1004 Gene3D - 36 88 - -
Phco2g00715 1004 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Phco2g00715 1004 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 757 812 - -
Phco2g00715 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Phco2g00715 1004 CDD SANT 40 83 IPR001005 -
Phco2g00715 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Phco2g00715 1004 SUPERFAMILY Homeodomain-like 35 98 IPR009057 -
Phco2g00715 1004 CDD SANT 143 183 IPR001005 -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 205 222 - -
Phco2g00715 1004 MobiDBLite consensus disorder prediction 930 1004 - -
Phco2g00715 1004 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Phco2g00715 1004 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Phco2g00715 1004 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Phco2g00715 1004 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00715 Phco-Chr2 7438995 7446596 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00715 Myb_DNA-binding 4.7e-14 CL0123