Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00632 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTTCCAGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAGCAACAGCAACAGCAGCAGCAGCCACAACCTCAGCAGTCGCAACATCAGCAGCAGCAGCAGCAACAACAACACATACAGATGCAACAAATCCTGTTACAGAGGGCTCAGCAACAACAACAGCAGCAACAACAGCAGCAGCAGCAACCACAACAGCAACAGCAACAGCAACAGCAGCCACAACATCAGCAGCCACCACCTCAGCAGCAGCAGGGTAGGGAAAGGACTCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTACGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGGCCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCGTCAGGCCAAGTTTTGCATGGTGCCGCTGGTGCAATGTCTCCACAAGTTCAAGCACGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATAAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCTCTAACGGGGTTGGAGCAACTACGTTCTGGTATACTTCAGCAACAGAAACCACCTTTCATACAGTCTCCTCAAACATTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACAGCTAATTCTGGCACAGCAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAATAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTTGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCCGCTTTCCAGCGTAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACAGCATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATGGGGGGAGGTGGTGGCAGTGTCAATTTAGATGGTAGCATGTCAAACTCCTTTAGAGGCAACGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCGACACATACACCCAGTGATGTGATGTCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCATTAATAATGTTTGGCCCTGATGGTGCGGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGTTTTGTGGAGGATGGATCTCTTGACGATAATGTTGAGTCTTTTTTATCCCATGAGGATAATGACCCAAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACCTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCCTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAAAAGGCCACTCTTGAAGAGCATTCTTCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCTACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTACTTTTACTGGTCATTCTTCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGAGGATCTTATTTGCTCTTGTGATGTTGATGGTGAGATACGATATTGGAGCATTACCAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATATTTGATGTGGAAACACAAGCATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAGTTTCACTCATGTGTTTTTCATCCAACATTTTCTTCGCTGTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTCTGGAACATGAGTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCTGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTCTGGAAGTGA 2703 0.4495 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEVAASYIETQFMKAREQQQQQQQQQQPQPQQSQHQQQQQQQQHIQMQQILLQRAQQQQQQQQQQQQQPQQQQQQQQQPQHQQPPPQQQQGRERTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGGQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGILQQQKPPFIQSPQTFHQLPMLTPQHQQQLILAQQNLASPSGSDDNRRLRMLLNNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKMGGGGGSVNLDGSMSNSFRGNDQVSKSQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPSDVMSMPALPHSGSSSKPLIMFGPDGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHEDNDPRDTVGRCMDVSKGFTFSEINSVPASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRTFTGHSSSVMSLDFHPNKEDLICSCDVDGEIRYWSITNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSIFDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTFSSLLVVGCYESLELWNMSENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 616 647 IPR001680 GO:0005515
Phco2g00632 900 MobiDBLite consensus disorder prediction 231 292 - -
Phco2g00632 900 Pfam WD domain, G-beta repeat 621 647 IPR001680 GO:0005515
Phco2g00632 900 Pfam WD domain, G-beta repeat 779 813 IPR001680 GO:0005515
Phco2g00632 900 Pfam WD domain, G-beta repeat 655 690 IPR001680 GO:0005515
Phco2g00632 900 Pfam WD domain, G-beta repeat 863 900 IPR001680 GO:0005515
Phco2g00632 900 Pfam WD domain, G-beta repeat 697 734 IPR001680 GO:0005515
Phco2g00632 900 MobiDBLite consensus disorder prediction 141 181 - -
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 868 900 - -
Phco2g00632 900 MobiDBLite consensus disorder prediction 249 268 - -
Phco2g00632 900 MobiDBLite consensus disorder prediction 463 533 - -
Phco2g00632 900 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 900 - -
Phco2g00632 900 SMART WD40_4 861 900 IPR001680 GO:0005515
Phco2g00632 900 SMART WD40_4 776 814 IPR001680 GO:0005515
Phco2g00632 900 SMART WD40_4 609 648 IPR001680 GO:0005515
Phco2g00632 900 SMART WD40_4 737 773 IPR001680 GO:0005515
Phco2g00632 900 SMART WD40_4 820 859 IPR001680 GO:0005515
Phco2g00632 900 SMART WD40_4 694 734 IPR001680 GO:0005515
Phco2g00632 900 SMART WD40_4 651 690 IPR001680 GO:0005515
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 783 823 IPR001680 GO:0005515
Phco2g00632 900 MobiDBLite consensus disorder prediction 416 540 - -
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 701 743 IPR001680 GO:0005515
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 868 900 IPR001680 GO:0005515
Phco2g00632 900 Gene3D - 593 750 IPR015943 GO:0005515
Phco2g00632 900 FunFam Transcriptional corepressor LEUNIG 744 900 - -
Phco2g00632 900 Pfam LisH 10 36 IPR006594 GO:0005515
Phco2g00632 900 Gene3D - 751 900 IPR015943 GO:0005515
Phco2g00632 900 MobiDBLite consensus disorder prediction 89 111 - -
Phco2g00632 900 SMART Lish 8 40 IPR006594 GO:0005515
Phco2g00632 900 MobiDBLite consensus disorder prediction 416 452 - -
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 693 IPR001680 GO:0005515
Phco2g00632 900 CDD WD40 620 900 - -
Phco2g00632 900 Coils Coil 116 139 - -
Phco2g00632 900 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Phco2g00632 900 ProSitePatterns Trp-Asp (WD) repeats signature. 677 691 IPR019775 -
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 658 693 - -
Phco2g00632 900 SUPERFAMILY WD40 repeat-like 612 900 IPR036322 GO:0005515
Phco2g00632 900 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 701 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00632 Phco-Chr2 6288707 6302373 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Phco2g00632 WD40 0.081 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00632 2 6288707 6302373 Phco7g00794 7 6177449 6192346 PCT