Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00607 ATGGATTCTCCAGAACCTTTCAAGAACAACAATAATGGCAGTTCTCCTTCCTCCGCTCCCAACAGCAACAACAATTCACCGGATTCCCCTCAAGAAGAATCCCCTTTTTGTAGATATGTAAGCTCTTTATCTCCAATAAACATCAAGGCTTCTCATGGCACACGAAGTTTTGTAGGGCTCAGTTCTCCACCCCTTGTATTCAAGTCTCCACGTATCAGTCACCGTGCAACACAGTTCATGCAAAGGCCACAAGGCAATCAGTCAGTCTCGGAAGTGCGATCTCAAAGTGAAAATGGAGGCAACATTCTCGGTGAAGCTTCTGGGTATTACTTGAAATCAAATTCTCATCAGCCACTGCCAGAGAGGTTTACAACTGACACTCAAAAGGTTTTTGACCCCAAGAATGATGCAAATATGCAACACTACGGTGGACATTTGTCTATTTATAAATATTTGGCTGATCCAGGGGATATTGATCAAATGTATTCAGCTGACCAAGATGTGGAACAACAATCTACAGATGCAGCTGAAACATCAGTTAGTTACCCAACTCAGTCAAATATATTAAATATTGGCAGGAAAGAGGGTCTTGGTGATAAAGCAGAAGAATATTTGCCTCTGTCAGAGGATTCTAACAAGGTTCATCAACAGATGCCAGTATACGGTGAAGAACCTAAAAGGATGGAAGGGGAGCAAAGTGATGTTGAGAAACGATACAGTCATGATCCACTTCTTCCCCAGAGTACTCTAAAGTCCAATGATGTTGGAAGACGCCGCCTACAGTTTGAGGAAGGTGCTTCCAGTGCTCCTGAAAGTAAAAAGTCTCATGAGAAACTGAATGCAACTTCCTCCTTGTATCCTCAGCAAGGTTGTGGAAACTTACCTTTGCCAGGTTCCAAGCCCTCAGGTATTGGGTTGCATTTAAATAGCATCGTAAATGCTATGCCAACTAATGAGGCTGCAACTACGGGTGTGAGATTACCAGATATTTCACCAAGGATGAAATCCACATCCTCAGAAAGGTTGCAAAGAAGGGAGAATATGAAGGGATCCATGCTTTCGTCCAATGTCAATGCGGAATCATCAGTTGATACTAGAACCGAGAGTCATGAAATTGATGCTACAGATGCTGGAAATTCCGCGGAATTCAACAAAACTCCTAGCCCCTGCAAGAAAAAGAAGAAAACATCGGTCCCTTCTAATCAAGATGGCTGTAAAGGGTGCCGCTGTAAGAAGAGTAAATGTATAAAACTTTACTGTGAGTGTTTTAATGCCGGAGTCTACTGCAATGGCCCTTGTGGTTGCCAAGACTGCTTAAACAGACCAGAATATAAAGAGACAGTTATGGAGTGTAAACAACAAATTGAATCCCGCAATACGGAAAATTCAGCAAGGCTCAAAAGAGGTTGCAATTGCAAAAGATCTACATGTCTGAAAAAATATTGCGAATGTTACCAGGCTAAAGTTGGATGCTCTAGTGGATGTGGATGTCAGGGATGCAAGAATTCATATGGCAAGAAAGAAGATTATGTGGCGGTTCAACATACTTGGAATATAGAAAGGATGAGTGGAAATAATCAGGAAATGGTGGCAAGCGAGACAGATTATGATCTACGGCGATTCTCACCTATAACACCATCATTGCAATGCCCTGACCAAGGCAAGGAGGCTGCAAAATCCAGAGTTATTAACATGTTTGCATCTTGTTCAAACAACACTCAATCTTCTCAAGATGAGACTGTGGTAACAGATGAGATGCTGAGAAATGATTCTTATGATTCGGAAATTGAATGCAACAATGCTATGTTACTTCAGGATACTCTTCCATCCAATCCTTCATTCTCATATGCAGCTAATCAGTGGAAAACTGTTTCTCCATCCCCATTTTCTCGCGAACCTATTCGCCAGTGTCCTGGATCAGATTGCACGCCCTTTAACATGATAGTACGTGAAATTCATGAAGCTTCAACTCTCATGACGTCTGTCAAAGTAAATTCCCCAAGTCAAAAACAAGTTTCTCCTCCCCAGAGTGGTCTTGTGATTGGATCCGGCTCCTCTGGAGGATTGAGAGGAGGCAGGAGAACTATATTGCAATCTGTTCCTCCTTTCCCTCCATTGTCTCCTTGCGTTGATTCCAAAATCAATAACAACAAAGATCTGGGTAACAGTCAGAGCAAGGATCCACATTGTCCAAGCAGATGA 2202 0.4233 MDSPEPFKNNNNGSSPSSAPNSNNNSPDSPQEESPFCRYVSSLSPINIKASHGTRSFVGLSSPPLVFKSPRISHRATQFMQRPQGNQSVSEVRSQSENGGNILGEASGYYLKSNSHQPLPERFTTDTQKVFDPKNDANMQHYGGHLSIYKYLADPGDIDQMYSADQDVEQQSTDAAETSVSYPTQSNILNIGRKEGLGDKAEEYLPLSEDSNKVHQQMPVYGEEPKRMEGEQSDVEKRYSHDPLLPQSTLKSNDVGRRRLQFEEGASSAPESKKSHEKLNATSSLYPQQGCGNLPLPGSKPSGIGLHLNSIVNAMPTNEAATTGVRLPDISPRMKSTSSERLQRRENMKGSMLSSNVNAESSVDTRTESHEIDATDAGNSAEFNKTPSPCKKKKKTSVPSNQDGCKGCRCKKSKCIKLYCECFNAGVYCNGPCGCQDCLNRPEYKETVMECKQQIESRNTENSARLKRGCNCKRSTCLKKYCECYQAKVGCSSGCGCQGCKNSYGKKEDYVAVQHTWNIERMSGNNQEMVASETDYDLRRFSPITPSLQCPDQGKEAAKSRVINMFASCSNNTQSSQDETVVTDEMLRNDSYDSEIECNNAMLLQDTLPSNPSFSYAANQWKTVSPSPFSREPIRQCPGSDCTPFNMIVREIHEASTLMTSVKVNSPSQKQVSPPQSGLVIGSGSSGGLRGGRRTILQSVPPFPPLSPCVDSKINNNKDLGNSQSKDPHCPSR 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00607 733 MobiDBLite consensus disorder prediction 1 37 - -
Phco2g00607 733 MobiDBLite consensus disorder prediction 220 241 - -
Phco2g00607 733 MobiDBLite consensus disorder prediction 665 733 - -
Phco2g00607 733 MobiDBLite consensus disorder prediction 351 397 - -
Phco2g00607 733 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 468 503 IPR005172 -
Phco2g00607 733 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 406 441 IPR005172 -
Phco2g00607 733 SMART CXC_2 465 506 IPR033467 -
Phco2g00607 733 SMART CXC_2 403 444 IPR033467 -
Phco2g00607 733 MobiDBLite consensus disorder prediction 710 733 - -
Phco2g00607 733 ProSiteProfiles CRC domain profile. 404 505 IPR005172 -
Phco2g00607 733 MobiDBLite consensus disorder prediction 219 256 - -
Phco2g00607 733 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 459 IPR044522 GO:0003700
Phco2g00607 733 MobiDBLite consensus disorder prediction 665 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00607 Phco-Chr2 5956067 5960558 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Phco2g00607 TCR 1.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00607 2 5956067 5960558 Phco2g00607 2 5956067 5960558 ECH
Phco2g00607 2 5956067 5960558 Phco7g01653 7 15981363 15983687 PCT