Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00575 ATGTCTTTTGACCTCAACAAAGAGCTTGCTCTATTGGTCTTAAAGTACTTTCATGACCAAAATTTTAAGGAAACAGCACTCACGCTTGGTTGTGAAAGTGGGTTATTCTTTGACATGAAGTATTTTGAGGAGATGGTGCTTAAGGGCAAGTGGGATGAGGCTGAGAACTATCTTTTAGGGTTCACAAAGGTCAAGGACAATGACTACTCAATCAAAATATACTTTGAAATGAGGAAACAGAAATACTTTGAGGCATTGGACAATAATGATCGTTACAAGGCCTTAGATATTCTCTTGAAGGATCTCAAAATCTTTGCACAAGGGAATGAGAAGTTGATCAAAGACCTTAGTCACCTTTTGATAGTTGATAATATAAGGGAAATTAAACCAACATATCGAGATGCAATTTCTGAGAGGAAGAATTTGATATTTGAAATTAAGAAAATTATAATTCAACATCCTCTCTTAGGTGGTAAGCTAAAACTGCCAGACACCGAAATTCACAGACTGCGTTATCTTCTCAGTCAAAGCTTAAAATGGCAGAAGCATCAAAAGCCTGATCAAGAACCTGACTTGTTAAGGGATCATGACAGTAATTCCAAACCTTCTGCATCAGCTCTAATAAATTCAGGAACAGCTTTGGAGTGGAGACTTTCAACTAGTAGAAGGCTAAGTATGGATTCTGAACAGGGAAACCGCAATGGAGTTTTGAGGGATGTGAAAAAGCTTTCAATTGAAGAATCCCTTAACAAATCAAAGAATGCATTGGATATTGGCACATCATCTCAGTACCAGTTCTTGCAGCTCCCTAAGCATCCTGAAGTAAAAAGGATTGTTAAACTGGCTTACAACAATGCGGGAAATTCAATCTTGGCATTGGCATCGAATGGTATTCATCTGGTTTGGCTCTGGCCACGTACTGGCTTTAACTTGGATGGCAAGGCTAGTGCTCAGGTTTGCCCTCAATTGCAGCAACCAAAGGATGGCTTCCAAGTTATGATCAATGACCTTTCAAGGGTCAGAAGTGCAAACCCAGTTTCCTGTTTTGCATTATCAAAACAGGGTGGATATGTCATATCAACATCAGGGGGCATGATCTCTTTGTTCAATATGGTGTCCTATAAGACTCTGAGAACCATCATGTCTCCACCACCTATGGTAACATGTCTAGCTTTCTACCCTGAAGATAACAATATATTTGGTATTGGCTTTGATGACTCCAGCTTAATTATGTATAATGTTCGTGATGATCAGGTTTTACACAGGCTTGAGGGTCACTCCAAAAGAGTTACTACTCTTGCCTTCTCAAGCACTTCCAATATTCTTATATCTGGTGATGCAAATGGTCAGATCATTCTATGGGATACAAATGGGTGGAAAAATCTGAAAGATATAAAGTTGCAAATACAAGAAAACCACATGCTAGAATCTGAAACTCAAATTCAGTTTCATCCAGATCAAATGAAATTTCTTGCTGTATATATTGGTCATGTTGCAATATATGAAATAACAGAACTAAGATGTGTCAATGAGTGGGTTCCAGAAGTTCCAGAGCTTATCTCTCAAGCAACCTTCTCATCCGATGGTCACATTGTGTATTCCATTTTTGTTGATGGGACAGTGGCAGTATTTGATGCAACAAATTTTGAAATTCGTTGTAGGATTTGTACCTCTTCTTATCTTCCTCCAATTTCAAGTTTGAGCATCTACCCAATTTCCATAGCAGCACATCCACAGAAACCAAACCAGTTTGTTGTGGGGCTCACAGATGGCAGTGTTTATGTGTTTGAGCCACAGAAGCCAGGGGGTGATTGGATCAAAAATCATTGA 1830 0.3891 MSFDLNKELALLVLKYFHDQNFKETALTLGCESGLFFDMKYFEEMVLKGKWDEAENYLLGFTKVKDNDYSIKIYFEMRKQKYFEALDNNDRYKALDILLKDLKIFAQGNEKLIKDLSHLLIVDNIREIKPTYRDAISERKNLIFEIKKIIIQHPLLGGKLKLPDTEIHRLRYLLSQSLKWQKHQKPDQEPDLLRDHDSNSKPSASALINSGTALEWRLSTSRRLSMDSEQGNRNGVLRDVKKLSIEESLNKSKNALDIGTSSQYQFLQLPKHPEVKRIVKLAYNNAGNSILALASNGIHLVWLWPRTGFNLDGKASAQVCPQLQQPKDGFQVMINDLSRVRSANPVSCFALSKQGGYVISTSGGMISLFNMVSYKTLRTIMSPPPMVTCLAFYPEDNNIFGIGFDDSSLIMYNVRDDQVLHRLEGHSKRVTTLAFSSTSNILISGDANGQIILWDTNGWKNLKDIKLQIQENHMLESETQIQFHPDQMKFLAVYIGHVAIYEITELRCVNEWVPEVPELISQATFSSDGHIVYSIFVDGTVAVFDATNFEIRCRICTSSYLPPISSLSIYPISIAAHPQKPNQFVVGLTDGSVYVFEPQKPGGDWIKNH 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00575 609 SMART WD40_4 416 455 IPR001680 GO:0005515
Phco2g00575 609 SMART WD40_4 336 370 IPR001680 GO:0005515
Phco2g00575 609 SMART WD40_4 505 545 IPR001680 GO:0005515
Phco2g00575 609 SMART WD40_4 563 597 IPR001680 GO:0005515
Phco2g00575 609 SMART WD40_4 373 413 IPR001680 GO:0005515
Phco2g00575 609 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Phco2g00575 609 MobiDBLite consensus disorder prediction 182 198 - -
Phco2g00575 609 Pfam WD domain, G-beta repeat 418 455 IPR001680 GO:0005515
Phco2g00575 609 MobiDBLite consensus disorder prediction 181 205 - -
Phco2g00575 609 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 36 93 IPR006595 -
Phco2g00575 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 464 IPR001680 GO:0005515
Phco2g00575 609 SMART ctlh 35 93 IPR006595 -
Phco2g00575 609 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 233 607 IPR027728 GO:0006355
Phco2g00575 609 Gene3D - 481 603 IPR015943 GO:0005515
Phco2g00575 609 Gene3D - 236 480 IPR015943 GO:0005515
Phco2g00575 609 SUPERFAMILY WD40 repeat-like 343 599 IPR036322 GO:0005515
Phco2g00575 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 423 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00575 Phco-Chr2 5469972 5475137 Dispersed/Wgd