Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00570 ATGTCTTCCTTTTCCGCCATCAGAACCCGATCCTCACCGTTCATCGCCCAAAGCTTCTCGATCCATCGCTTCCAGATCCGCCACTCCTCTACCTCTCCCTCCGCCTCCTCGCTCCTCAACACCACCGACCCCGTCCCGAACGGGTTCGGTCGAACTGCACTTTCGACCGCCCTCGCCGGCTCCAGTGTCCTAGGGCTTCTTCTCTACGGCTTCTACTCTTTTTCGCCGACTGATTTTGATTCAATCGCTTCTTTTGTTGACCGCTCAACGCCGAATTCCGAGGACCAAAACCAACCTCGCTCCTTCTTTCCGAAATTTTCACTCCCTGAAAGTTCCGGTAGCTTGCTACTTGGAGATGCGTTCAGGAGAAATGTTTTCTTCAACTATGAGAAGCGCATGAGGTTGCGAAGTCCTCCGGAAAAGGTTTTTGAGTACTTTGCATCTGATCGTAGTCCAAAAGGAGAAGTACTGATGAAACCAGCAGACCTAATGCGGGCAGTGGTTCCTGTTTTCCCTCCATCTGAATCCCACCTTGTTAGAGATGGATACTTGGGAGGAGAAAGGAGTCCGGGTCATTTACGCTGTCCTCCTTCTGAATTTTTTATGCTTTTTGATGTGAATAATGACGGACTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCGGAATCAAGTTTTACTGTGGCATTTAAAATGTTTGATGTCAACAATAATGGGGAGATAAGTAAGGAAGAGTTCAAGAAGGTGATGGCATTGATGCGATCTCGTCATCGGCAGGGTGTTCACCACAGGGATGGACTGCGAACTGGCCTAAAGGTGAATGATTCTGTGGAAGATGGAGGGCTGGTGGAATATTTGTTTGATAAAGATGGAAATGGATGCCTCCAGCATGATAAATTTGTTAAATTTTTAAGAGACCTGCATGATGAGATTCTGAGACTGGAGTTTGCTCATTATGACTACAAATCACAAGAAACCATATCAGCCAAGGACTTTGCACTCTCCATGGTTGCTTCTGCAGACATCAGTCATCTAAGCAAGTTGCTTAAACGGGTTGATGTATTGAATGATGATACATGCCTCAAGGATGCACGTATCACATTTGAGGAGTTCAAAAGCTTTGCTGAGCTACGAAAAAAATTAGTGCCATTTTCATTGGCTATTTTTAGTTTTGGAGAAGTAAATGGTCAGTTGACAAGAGACGATTTTCAGAGGGCAGCATCACAGGTATGCGGCATATCTCTCTCGGACAATGTGGTTGACATTGTTTTCTATTTGTTTGACACAAATCGGGACGGAAACCTAAATTTTGACGAGTTTATGAGAGTGCTACACAAGCGAGAAAGGGACATTGCACAACCCGTGGGGACAGGAATCATGGGTTGGTTATCATGCTTCTGGAATTGTAGTAATAACAAATCTTCAGGGTTGTTTTCCTGA 1455 0.4474 MSSFSAIRTRSSPFIAQSFSIHRFQIRHSSTSPSASSLLNTTDPVPNGFGRTALSTALAGSSVLGLLLYGFYSFSPTDFDSIASFVDRSTPNSEDQNQPRSFFPKFSLPESSGSLLLGDAFRRNVFFNYEKRMRLRSPPEKVFEYFASDRSPKGEVLMKPADLMRAVVPVFPPSESHLVRDGYLGGERSPGHLRCPPSEFFMLFDVNNDGLISFKEYIFFVTLLSIPESSFTVAFKMFDVNNNGEISKEEFKKVMALMRSRHRQGVHHRDGLRTGLKVNDSVEDGGLVEYLFDKDGNGCLQHDKFVKFLRDLHDEILRLEFAHYDYKSQETISAKDFALSMVASADISHLSKLLKRVDVLNDDTCLKDARITFEEFKSFAELRKKLVPFSLAIFSFGEVNGQLTRDDFQRAASQVCGISLSDNVVDIVFYLFDTNRDGNLNFDEFMRVLHKRERDIAQPVGTGIMGWLSCFWNCSNNKSSGLFS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00570 484 Gene3D - 136 271 - -
Phco2g00570 484 Gene3D - 399 459 - -
Phco2g00570 484 SUPERFAMILY EF-hand 199 340 IPR011992 -
Phco2g00570 484 SMART efh_1 424 452 IPR002048 GO:0005509
Phco2g00570 484 SMART efh_1 196 224 IPR002048 GO:0005509
Phco2g00570 484 SMART efh_1 230 258 IPR002048 GO:0005509
Phco2g00570 484 Pfam EF hand 200 217 IPR002048 GO:0005509
Phco2g00570 484 Pfam EF hand 234 257 IPR002048 GO:0005509
Phco2g00570 484 ProSitePatterns EF-hand calcium-binding domain. 239 251 IPR018247 -
Phco2g00570 484 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Phco2g00570 484 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Phco2g00570 484 SUPERFAMILY EF-hand 317 454 IPR011992 -
Phco2g00570 484 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 44 479 IPR039800 GO:0005509|GO:0006851
Phco2g00570 484 Gene3D - 287 391 - -
Phco2g00570 484 CDD EFh 199 256 IPR002048 GO:0005509
Phco2g00570 484 ProSiteProfiles EF-hand calcium-binding domain profile. 291 315 IPR002048 GO:0005509
Phco2g00570 484 ProSiteProfiles EF-hand calcium-binding domain profile. 226 261 IPR002048 GO:0005509
Phco2g00570 484 Pfam EF-hand domain pair 400 450 IPR002048 GO:0005509
Phco2g00570 484 CDD EFh_MICU 231 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00570 Phco-Chr2 5449095 5453434 Dispersed