Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00565 ATGAGAAACAGTTTGGACATGATGTGGAGAGAGAGAGCATTCATGGTGGTACTGCTACTTCTAGTCCGGAAAATTCATGGTGGCTGCCCCTCTTCTTCCTGTGGTAAAATCGCCAACATCAATTACCCTTTTCGATTAAAAGGCGACCCAGAAGAGTGTGGTGAGGAAAGGTATGAGCTTGATTGTGAGAATAATGTTACGGTGTTGTATCTGTACTCTGCACAATATCATGTGCAAGCAATCAACTACAAGAACTACACAGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTGCGTTTCCTCTCTCGCTCCAATTTCTCTGATACTTACACTGGCTCCACAGTGAGAGAGAAAGGGAAGTACGTGGAGAGTGGAGAGTTGGTGAAGTGGGAGGGGAAGGGCTATGCATATGCAATTGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGCGAGGTAAAGCTTGTTGCTCCCACTTCTCTCTCCAATTTCGATAACCATTCCTACACTTCCATGCACACCGCACTCGCCTATGGATTCGAGATTTCATGGATAGAACAAGCCTGTCTGAAACATTGTTCATTTTCAAATAGAGATTGCTATTTGGACTCTTCTAACCAGAAGCTTCATTGCGGGAATACTGGATCAACTAAGAGTGGTTTTAACAAATATTCATACAAGGAAATCAAGAACATGGCTGCTGGATTCAAAGAGAAGTTAGGTGAAGGAGGATTCGGCTATGTCTTTAAGGCAAAGTTGCGCAGTGGGTCTCCTGTAGCCATCAAAATGTTAGGAAAATCCAAAGGAAATGGACAAGATTTTATCAGTGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACGGTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGTGCTCTTGTCTATGAATTCATGCCTAATGGATCTCTTGATAAATTTCTTTTCTCAAAAGAGATAAATATACATTTAAGCTATGAAGATATATATAATATATCAATCGGAGTGGCTCGTGGGATTGCTTATCTCCATCATGGGTGTGAGATGCAAATTTTGCATTTTGACATCAAACCCCATAACATCTTACTAGACGAAAACTTCATACCTAAGATTTCTGACTTTGGATTGGCAAAGTTATATCCAATAGATAATAACATCGTCACAATGACTGTAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGAGGAATATCTCATAAGGTTGATGTTTATAGTTTCGGAATGTTGTTGATGGAGATGGCAAGTAAGAGGAAAAATCTAAATCGTCATGCAAACCACTCAAGTCAACTTTACTTTCCCCTTTGGATCCATGATCATATTAGAAAAAGGGAAGATGTAGATATCGAAGATGTGACTGAAGAGGAAAATAAAATAGCAAAGAAGATGTTCATAGTTGCATTATGGTGTATACAACTAAAACCTAATGATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGATATTGAAGACTTGGAAATACCTCAAAAACCTATTCTATTTTCAGAAGATGAAATAGTGACAGAGGATCAAACAATCAACACTACAAGAAAATCATTGAATAGAAACCAATTTTAG 1659 0.3906 MRNSLDMMWRERAFMVVLLLLVRKIHGGCPSSSCGKIANINYPFRLKGDPEECGEERYELDCENNVTVLYLYSAQYHVQAINYKNYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYTGSTVREKGKYVESGELVKWEGKGYAYAIGGDLKAEDLEVGCEVKLVAPTSLSNFDNHSYTSMHTALAYGFEISWIEQACLKHCSFSNRDCYLDSSNQKLHCGNTGSTKSGFNKYSYKEIKNMAAGFKEKLGEGGFGYVFKAKLRSGSPVAIKMLGKSKGNGQDFISEVATIGRIHHQNVVRLIGFCVSGSKRALVYEFMPNGSLDKFLFSKEINIHLSYEDIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKISDFGLAKLYPIDNNIVTMTVARGTIGYMAPELFYKNIGGISHKVDVYSFGMLLMEMASKRKNLNRHANHSSQLYFPLWIHDHIRKREDVDIEDVTEEENKIAKKMFIVALWCIQLKPNDRPSMNRVVEMLEGDIEDLEIPQKPILFSEDEIVTEDQTINTTRKSLNRNQF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00565 552 SUPERFAMILY Protein kinase-like (PK-like) 227 513 IPR011009 -
Phco2g00565 552 FunFam PR5-like receptor kinase 317 524 - -
Phco2g00565 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Phco2g00565 552 ProSitePatterns Protein kinases ATP-binding region signature. 248 270 IPR017441 GO:0005524
Phco2g00565 552 PANTHER RUST RESISTANCE KINASE LR10-RELATED 226 533 IPR045874 GO:0004672
Phco2g00565 552 Gene3D Transferase(Phosphotransferase) domain 1 317 524 - -
Phco2g00565 552 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Phco2g00565 552 Gene3D Phosphorylase Kinase; domain 1 216 316 - -
Phco2g00565 552 ProSiteProfiles Protein kinase domain profile. 242 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00565 552 SMART serkin_6 242 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00565 552 Pfam Protein kinase domain 245 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00565 552 FunFam serine/threonine-protein kinase PBS1-like 211 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00565 Phco-Chr2 5417370 5420208 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco2g00565 Pkinase 2e-49 CL0016