Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00562 ATGAGAAACAGTTTGGACATGATGTGGAGAGAGAGAGCATTCATGGTGGTACTGCTACTTCTAGTCCGGAAAATTCATGGTGGCTGCCCCTCTTCTTCCTGTGGTAAAATCGCCAACATCAATTACCCTTTTCGATTAAAAGGCGACCCAGAAGAGTGTGGTGAGGAAAGGTATGAGCTTGATTGTGAGAATAATGTTACGGTGTTGTATCTCTACTCTGCAAAATATCATGTGCAGGCAATCAACTACAAGAACTACACAGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTCCGTTTCCTCTCTCGCTCCAATTTCTCTGACACTTACAAGTACACTTCCTTTTACGACTCGGATCCATACCAAGCCTTTGTAAACGTCGATAAAAATTGGGAATATCTGAGTTTCGAGCATATAGTGTTTGTGAATTGTAACCATTCGTTGGGAGAAAAAGGGAAGTATGTGGAGATTGGAGAGTGGGTGAAGTGGGAGGGGAAGGGCTATGCATATGCAATTGGTGGAGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTTTCCACTTTCGATAACCATTCGTACACTTCCATGCACACCGCACTCGCCTATGGATTTGAGATTTCATGGATACAACAAGCCTGTCAGAAACATTGTCCAGATGATGATGATAGCTATTGCTATTTGGACTCTTCTAACCAGAAGCTTAAATGCCGATATGGTATTCTCTTATATATCTCAGTTATTCTCGTATATATCTCTATACTATGGGCTTACAAAGTTTTGTTTGGATTGCCATTCTTAATTATTATTTTTATATATAAATGGAGAAAAAGACATACCTCAATGTATGAAAATATTGAAAATTATCTTCAACAAAATAGTTTGGCACCTATTAGATATTCATACAAGGAAATCAAGAACATGGCTGGAGGATTCAAAGAGAAGTTAGGTGAAGGAGGATTCGGCTATGTCTTTAAGGCAAAGTTGCGCAGTGGGCCTTATGTGGCCATCAAAATGTTAAGCAAATCCAAAGGAAATGGACAAGATTTTATCAGTGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACGGTTAATTGGATTTTGTGCTAGTGGCTCAAAGCGTGTTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAGAGAAATATACATTTAAGCTATGAAAAGATATATAATATATCAATCGGAGTGGCTCGTGGGATTGCTTATCTTCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCATAACATTTTATTAGATGAAAACTTCATCCCTAAGGTTTCTGACTTTGGATTGGCAAAGTTATATCCAATAGATAATAGCATCGTCACAATGACTGCAGCAAGAGGAACTATTGGATATATGGCTCCAGAATTGTTCTATAATAATATTGGAAGAATATCCCATAAGGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAGATGGCAAGCAAGAGGAAGAATCTAAATCCCCATGCAGATCACTTAAGTCAACTTTACTTTCCTCTTTGGGTCTATGATCATATAAGAGAAGAGGAAGATATAGATATGGAAGATTTGAGTGAAGAGGAAAAGATAATAGTAAAGAAAATGATCATAGTGTCTCTTTGGTGCATACAATTGAAACCAAGTGATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGACATTGAAGACTTGGAAATGCCTCCAAAACCTATTCTATTTCCAGATGAAATGATGGTGACAGATGATCAAACAATCAACTCTAGCTAG 1884 0.3838 MRNSLDMMWRERAFMVVLLLLVRKIHGGCPSSSCGKIANINYPFRLKGDPEECGEERYELDCENNVTVLYLYSAKYHVQAINYKNYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYKYTSFYDSDPYQAFVNVDKNWEYLSFEHIVFVNCNHSLGEKGKYVEIGEWVKWEGKGYAYAIGGDLKAEDLEVGCEVKLVAPTSLSTFDNHSYTSMHTALAYGFEISWIQQACQKHCPDDDDSYCYLDSSNQKLKCRYGILLYISVILVYISILWAYKVLFGLPFLIIIFIYKWRKRHTSMYENIENYLQQNSLAPIRYSYKEIKNMAGGFKEKLGEGGFGYVFKAKLRSGPYVAIKMLSKSKGNGQDFISEVATIGRIHHQNVVRLIGFCASGSKRVLVYEFMPNGSLDKFIFSKERNIHLSYEKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTMTAARGTIGYMAPELFYNNIGRISHKADVYSFGMLLMEMASKRKNLNPHADHLSQLYFPLWVYDHIREEEDIDMEDLSEEEKIIVKKMIIVSLWCIQLKPSDRPSMNRVVEMLEGDIEDLEMPPKPILFPDEMMVTDDQTINSS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00562 627 ProSiteProfiles Protein kinase domain profile. 326 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00562 627 SUPERFAMILY Protein kinase-like (PK-like) 310 597 IPR011009 -
Phco2g00562 627 SMART serkin_6 326 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00562 627 FunFam serine/threonine-protein kinase PBS1-like 294 400 - -
Phco2g00562 627 Pfam Protein kinase domain 329 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00562 627 Gene3D Phosphorylase Kinase; domain 1 299 400 - -
Phco2g00562 627 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Phco2g00562 627 FunFam PR5-like receptor kinase 401 608 - -
Phco2g00562 627 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524
Phco2g00562 627 Gene3D Transferase(Phosphotransferase) domain 1 401 605 - -
Phco2g00562 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Phco2g00562 627 PANTHER RUST RESISTANCE KINASE LR10-RELATED 299 616 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00562 Phco-Chr2 5399512 5402687 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco2g00562 Pkinase 4e-48 CL0016