Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00555 ATGAATGCAAGTTATTTTTATCCACAAGTTGCCCTTGGTTTAAGATCAAAATTTGTTGGAGGGAAGCAAGTTCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCCATGGATCAGGCCAAGCAGATGCTGGAAATTCATTTCTGTCTCTACTCTATGGTACTCCATCCTTGTTACAGTATGATTTCCAGAATTTTTCTGAACGCACGCTTGGCATCTCATCTAGTGATTCTACTGATGCTATTGGGAATTCTTTTATTAGTTCTATAGAAAGTGGAACCTTCTGGACATCTGGTGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAACTTTCCAGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAGTTTTGTCTTCCACAATATTCGGGGCAGCAATACTGCTACTCAGCCCACAGTTCCTGGTGGTGGAAAAGCGAGGGAATCTTTTTCTTTTCCAGGTCAGTGCCATGGTACATGCCCCACATTTGGTCAAAATGTTTGCTGCTCAGATATTCAGACTGCACCTAATATTGCTTTAGAATGGTGCTCATCTAAGTATGCAACTTCTTTTATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTTTGCTCATGCCATTGTTGCCACATGTCTGTTCTTAAGTTTTGTGAGCATTCAGGGTTACATGGCGTTGACCCAGGGGTTGCTGTTTGTATGGAGAGTGGGGAGACCATTTCAGAATGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGAATGGGACTCGGCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATTCAATGCGTCTGCTTTTGATGTGTCCAAGACTAACTTGTCTCATGTGTTGAGTTCATCTGCAGTCATGTCAAGAAAACAAGCAACGACAATCCAGGATGGTTGCAACATTCCACTCAAAGGTTGTACTGGTATTTCACAAAAGAGCTTTGCTGATCAGTTGAAAAACCAGTTAATGGAATCTAATCTGGGTATGTATACAACTGCACCAAATTTTGGTGGAACTCAACTGGATGATGGTTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAGGGACAGGAAGTTTGTCAACTGCCCACTCACCTTTGCAAACACCAACAAACCTTTTGAAAGACCATGATTGCATAACAAAGAATGCAAATGATGGTCTTGCAGGCAGAGACGCAGCTTCCTCCAATGTTGATCTTAGGCTTGGTCAACCACCTCAGACAGGAAATCCACTTCCATCATTTATAGAACCACTGCTGTATGCCCTTGCCAGTCCACCAAAATCACAACCTCAGAAGCAGATGATTAATAACCTCGGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATGCTGCTGGTTCATGCAAAATGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGAGTAAGGCTTCTGCTAAAGCTGGTTCAGAAACCAAAAATGTGGCCAAGGGTGTATCATTTTCATCATTTTCGCGAATTGATATACCTGGAGGGAAGGCACAAGCTAGTGAAAATTTGTGGAACGGTGTCAGCCCTATCATGCCTAAGAAACTGTATTCTGATTATGGTCACACAGGAGGGCAATCAAATAGACCTGTAATAGGGACCAATAAATATTTGGGCAATAATAAAGGGGTGAGCTTTGCCAAAGATTCTGGTGCCAAAAAAAATTCTGGATTTGGAATTGGTCAGTTAATGGAATATCCAAGCTCCATGAGGAGAGCCGTTGGTGGTTATGATAGTAGTACTTCAGTTGTTAATGAAAAGATGTATGAATCAACTTTTGAATCTAGCTTGCCATTGGATACATCTATGGGTGCAAATATTTTGCAAGGCTCACACAATATGTCTTCTCTTGGGCTACAAAATCATGTGAATCAACAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCCTTCCGAATCATGCTTCAATTTCTGTGTCAAATCAGACTCCAACTTTGCCACAACAGGAGGCAATTAATATGGATGTTTATTTAGTTGATGAAAAGACGAGGTGGCTTGCAATGACACAGATACCGGAGTTATCTGAGCAACATCATGCATTCAATTTTAATATGAAACAGAAGCAAGGGGGATCCAGCAGTATTTCGAAAGTTCAGCATTATGCTTGTGAGGCTTCAACATCTGAGCAGGGAACCTCTTCTGCAACATTGAAATTGCCTCAAGATAGAGGAATTTTTGGGAATCATGAGAATACTGTTGGTTTGGAGAAGTTGCCTTCCCTCACAGGTATGAACAGATATTATCATTTGTCTGACCTGTCGCCAACACCTTTACATTCTAAAGAAAAGGAAACGCAATGTAAACATTCTTCTGATCTTCAAAATGAAGAAACTTCTTTAAGCCTTGGTATAAAGAAAGACAATATCAGATCAAGTGCATGTGAAAAATGCTCTGAGCAACCATCAAATATATGTCTGGAAGGCGAGTATCCTTCTGCCGCTCTGATAAACTGTTGCCAAAGCAACTTTTTCTCAGGGATTGAACCCCTTTGTAATAACCTAAGGCAACAACTTGCTAATGTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTGGAGAAATCCGAATACTTCGAACAACAGAAATATCCACTTTGAGCAAGGTGGGAAGATACTTGGCCAAGACTCAACCAGAATTGGCTTTCATGCCCCTCAGTGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTTTGATGCAACATCTTTAGATCAAACATCTACTGGTTTGGACAGGGAAGGACGAGATGATTTTCAACTTGGAAACATTTCCGTGAAACGCCCCAAAAGAACTACTGATATGGGAGACCTGTCAAAAGAAAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCCCCTGTGGTTACTCAGGCATCTGTGGTGGTCAACAAAATTGATTACTGTACTGATGATGCTGTTGGCTTTGTCAACAACCTTGTAGTTGATGAAGGTTCAGGTATTGATCAAGGCTCCTTGTCAGATTTAGTTGAAAGTGAAAGAACTGATGAGCTTCTAGGCTTGATCTCTGGGAATTACATGAAAAATGGATGTTCGAGAGTCTTAAATGATGAATCATGTTGCAATCTCCTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATCATTTTGTGGTTTCTGCTAATTGTAAAACCAATCTGTCTCATAATGTCAAGAGGGGCATCAAAGGAAGAAAGCGAAAGAGAAATGTGGTGAGGATTCTAGATGCTTCATTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATGATGAGGGTGCTGAGATTTTGAATTCCTCTTCTAGTTTGCCAAATGAAATGCAAATGCACTCTCTGTCTAGCCTGCTGAAATCATTTGACAAGTCTTCCTTTGTTCAACCTTGTAACAAACAAATACAGTCTGCATTTTCATCCAAATTTAATTCCTGTAAGAATAGTCTGAGCAAGCATCTCAGTTATAAAGTTGCCTATGAGTCTCAATCAAATTCTTATGCTGAGTTTCGCACGTTGCCTGGAGTTTCTGGAACAAAGAAATTGAGAAAGAATCTCACCTCTGATTGTTTTGAGCAGTTTCATATGCAAGAACCATCCTATGAGGAACCCAAAAAAGCAGAGTTGTGGCCATTCTTTTGCAGGAAGGAAAATGGTCATAGAATGACAAGGCCAGTAGTATGTGGAAAATATGGTGAAATACGCAATGGGCATTTGGCTAAAGAGGTGCAAAAGCCTGCAAAAATTGTCTCCCTCAACAAGGTCCTTAAATCTTCCAAAAGATGTATGAGCTACACAAATGGAAAACCTAGACTAACTTCAAAAAAGAAATGGAAGAGATTGAGCATTGGAACAGATAGTGAGTACTGCTGTGGGAACCGTGGTTTAAAAGTTAAGGAACACATTGAAACACAAAATACAATAATTTATAATGAAGCAAATGTTGATATGTCCCTGGAAGACTTAGATGACAAGCAAGATGCGAAAGCTAAAGGTAAGCAGGGTGTTAGAGTTGGAAACAGAGAAAATATTCTATTGAAGGTGAAGAACAAGGACATTCGAAAACATCGTAGCATTAATGAACTCACTGCTAAAGAAACCAAAGTGACGGATATGATGAATTGTGCTCAAGACAGAGAGCCTGGTTTGTGTAGCACAAAACGTAGAAACTCAATTCAAGGTCACACAAACATATCAACTATATACTCAGATACTTTCTGCTGTGTGTGTCGAAGCTCAAGCAATGATAAAATAAACTGTTTGTTGGAATGTTGTCAATGCCTAATTAAAGTGCATCAAGCGTGCTACGGTGTTTCCACATTACCCAAAAAAAGTCGTTGGTGCTGCAGACCATGCCGAACCAACTCAAAAAATATTGCATGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAACAATGAGTCACACGATTGTCAAGAGCCTCCTAAAAGTGTGGAATATTGAGAAAGATGACATGCCTAAGCATATGACTTCATGTGAATTTTTTGAGGAGGAAATATATACATTCTCATCCTCAAAAGCTGATCAAGAAAGTGCTTTGAAGCCCAAAATTTTTGATACATCAACAGATTTGGTGAAAGTTCAAATATCTATAAATAACACACACCACACCCCTACTACTCTTTATAGTTTCAAGGTACACAACAGCATTACTGAAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCAAATGTTGACACAATGAGTGCTTTTGATGTTTCTGGTGTTTCACGTCCCAGAGCAGATGTGGTTTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGATGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGGGAAGATTGGATTTTATGGGAGTTGCATGCTACATACTATTGAACCTAGATATCTGTCCATATATGATCCTATTGATGAAATAGGAAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGGGCAGAGGGTTACAAGGGCAGAAGATGGGATGGTTTTCAGAATAATCACTGCCAAGGTGGATGCGTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAAGGACTCACAAAATTCTCAGATTTGGATATGGAGCATAATTGTCGAAAGGAATACACTCGGTACAAGCAAGCAAAGGGATGGAAACACCTCGTTGTATACAAGTCCCGTATACATGCACTTGGTCTTTACACTTCTCGATTCATTTCCCGGGGTGAAGTGGTGGTTGAATATATCGGTGAAATTGTGGGATTGCGGGTGGCTGATAAAAGAGAGAAGGATTATCAATCTGGAAAGAAACTTCAGGACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCACGGTTTGTTAACCACTCATGCCTGCCAAATTGCGTGGCAAAAGTGATTACTGTAAGGCATGAAAAGAAGGTTGTCTTCTTTGCAGAGAGGGATATATTTCCTGGTGAAGAGATCACATATGATTACAACTTTAACCACGAGGATGAAGGAAAGATTCCATGTTACTGCAATTCAAAAAATTGCAGGCGCTACATGAACTGA 5898 0.4045 MNASYFYPQVALGLRSKFVGGKQVPVYPSFPLSTTHGSGQADAGNSFLSLLYGTPSLLQYDFQNFSERTLGISSSDSTDAIGNSFISSIESGTFWTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSSFVFHNIRGSNTATQPTVPGGGKARESFSFPGQCHGTCPTFGQNVCCSDIQTAPNIALEWCSSKYATSFMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCCHMSVLKFCEHSGLHGVDPGVAVCMESGETISEWRKLYFLKFGIRSLGNENEWDSAEVLSTTGSPMKFNASAFDVSKTNLSHVLSSSAVMSRKQATTIQDGCNIPLKGCTGISQKSFADQLKNQLMESNLGMYTTAPNFGGTQLDDGCHPIPPFLDSLKGTGSLSTAHSPLQTPTNLLKDHDCITKNANDGLAGRDAASSNVDLRLGQPPQTGNPLPSFIEPLLYALASPPKSQPQKQMINNLGREEGLQNNFSYAAGSCKMVEELPQLKPKNYMSAVSKASAKAGSETKNVAKGVSFSSFSRIDIPGGKAQASENLWNGVSPIMPKKLYSDYGHTGGQSNRPVIGTNKYLGNNKGVSFAKDSGAKKNSGFGIGQLMEYPSSMRRAVGGYDSSTSVVNEKMYESTFESSLPLDTSMGANILQGSHNMSSLGLQNHVNQQTSIPFKEILKGLPNHASISVSNQTPTLPQQEAINMDVYLVDEKTRWLAMTQIPELSEQHHAFNFNMKQKQGGSSSISKVQHYACEASTSEQGTSSATLKLPQDRGIFGNHENTVGLEKLPSLTGMNRYYHLSDLSPTPLHSKEKETQCKHSSDLQNEETSLSLGIKKDNIRSSACEKCSEQPSNICLEGEYPSAALINCCQSNFFSGIEPLCNNLRQQLANVSGETSLKMPSDLWRNPNTSNNRNIHFEQGGKILGQDSTRIGFHAPQWRDVPSKVRKAVFDATSLDQTSTGLDREGRDDFQLGNISVKRPKRTTDMGDLSKEKENSNVSSGCSAPVVTQASVVVNKIDYCTDDAVGFVNNLVVDEGSGIDQGSLSDLVESERTDELLGLISGNYMKNGCSRVLNDESCCNLLDDLKLLDSLIWKKERNQNHFVVSANCKTNLSHNVKRGIKGRKRKRNVVRILDASLSSEFPSLLHNKNDEGAEILNSSSSLPNEMQMHSLSSLLKSFDKSSFVQPCNKQIQSAFSSKFNSCKNSLSKHLSYKVAYESQSNSYAEFRTLPGVSGTKKLRKNLTSDCFEQFHMQEPSYEEPKKAELWPFFCRKENGHRMTRPVVCGKYGEIRNGHLAKEVQKPAKIVSLNKVLKSSKRCMSYTNGKPRLTSKKKWKRLSIGTDSEYCCGNRGLKVKEHIETQNTIIYNEANVDMSLEDLDDKQDAKAKGKQGVRVGNRENILLKVKNKDIRKHRSINELTAKETKVTDMMNCAQDREPGLCSTKRRNSIQGHTNISTIYSDTFCCVCRSSSNDKINCLLECCQCLIKVHQACYGVSTLPKKSRWCCRPCRTNSKNIACVLCGYGGGAMTRATMSHTIVKSLLKVWNIEKDDMPKHMTSCEFFEEEIYTFSSSKADQESALKPKIFDTSTDLVKVQISINNTHHTPTTLYSFKVHNSITEGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRMADCSVKFHPWCAHQKNLLQSETEGIDDGKIGFYGSCMLHTIEPRYLSIYDPIDEIGSQEEKEFTCARAEGYKGRRWDGFQNNHCQGGCVVPEEQLNAWIHINGQKLCSQGLTKFSDLDMEHNCRKEYTRYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEVVVEYIGEIVGLRVADKREKDYQSGKKLQDKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITVRHEKKVVFFAERDIFPGEEITYDYNFNHEDEGKIPCYCNSKNCRRYMN 1965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00555 1965 ProSiteProfiles Post-SET domain profile. 1949 1965 IPR003616 -
Phco2g00555 1965 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1452 1520 IPR013083 -
Phco2g00555 1965 CDD SET_SETD1-like 1823 1961 - -
Phco2g00555 1965 Pfam PHD-finger 1479 1513 - -
Phco2g00555 1965 Pfam PHD-zinc-finger like domain 1628 1703 - -
Phco2g00555 1965 SUPERFAMILY FYVE/PHD zinc finger 1462 1518 IPR011011 -
Phco2g00555 1965 SUPERFAMILY SET domain 1792 1961 IPR046341 -
Phco2g00555 1965 ProSiteProfiles Zinc finger PHD-type profile. 1464 1515 IPR019787 -
Phco2g00555 1965 Pfam Tify domain binding domain 225 271 IPR032308 -
Phco2g00555 1965 Pfam SET domain 1834 1942 IPR001214 GO:0005515
Phco2g00555 1965 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 467 1965 - -
Phco2g00555 1965 Gene3D SET domain 1734 1965 IPR046341 -
Phco2g00555 1965 CDD ePHD 1631 1714 - -
Phco2g00555 1965 ProSiteProfiles SET domain profile. 1821 1942 IPR001214 GO:0005515
Phco2g00555 1965 SMART set_7 1821 1948 IPR001214 GO:0005515
Phco2g00555 1965 MobiDBLite consensus disorder prediction 984 1005 - -
Phco2g00555 1965 SMART PHD_3 1668 1724 IPR001965 -
Phco2g00555 1965 SMART PHD_3 1466 1513 IPR001965 -
Phco2g00555 1965 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1611 1724 IPR013083 -
Phco2g00555 1965 SMART PostSET_3 1949 1965 IPR003616 -
Phco2g00555 1965 ProSiteProfiles Extended PHD (ePHD) domain profile. 1607 1724 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00555 Phco-Chr2 5312739 5332095 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco2g00555 SET 7.5e-18 No_clan