Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00548 ATGAGACAGCCTTCTTCAAGTGTTTCACAAAAACGAATCTACTTCATCTCATCATCGTCTTATGAGATGGCTTCTTCTGTTCTCTCCGCAGCTTTGAACTCTCTCTCTCCCTCTTATTCTCTCTCCTCGCGCCAAACCCACAAGGGGAAGCCCAAGACTGGAGGCAACGCTTTGAGATTTAACAACTCCTTCCCAAATGCAAGGTCTAGTGGTCGGGTTATGGCTGTTTCAGTTAATGTTTCTCGGTTTGAGGGCATACCTATGGCTCCTCCTGATCCAATTCTTGGAGTTTCTGAGGCATTTAAAGCGGACACAAGTGATGTCAAGCTCAATCTTGGAGTGGGGGCTTACCGAACAGAAGAACTGCAGCCATATGTGCTTAATGTTGTTAAGAAGGCTGAGAATCTTATGCTGGAGAGGGGGGATAACAAAGAGTATCTCTCTATTGAGGGTTTAGCTGCGTTTAACAAGGCAACTGCAGAGTTGTTACTTGGAGCAGACAACCCAGCAATCAAACAGCAAAGAGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGTTCTCTGCGGCTAGGTGCAGCTCTGATAGAAAGATATTTTGCTGGGGCTAAAGTTTTGATATCAGCTCCTACCTGGGGTAATCACAAGAATATTTTCAATGATGCTAGAGTGCCATGGTCTGAGTACCGATATTATGATCCCAAGACAGTTGGCTTGGATTTTGAGGGTATGATTGAAGATATAAAGTCAGCTCCTGAAGGATCTTTTGTGCTTCTACATGGATGTGCTCATAACCCTACTGGTATTGATCCAACACCTGAGCAATGGGAAAAAATAGCTGATGTAATTCAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGGGCTTTGCCAGTGGAAGCCTTGACGAAGATGCAGCTTCTGTGAGACTGTTTGTTGCACGTGGTATGGAGGTTCTTGTAGCTCAGTCATACAGTAAAAATCTTGGTCTCTATGCTGAAAGGATTGGAGCAATCAATGTGATTTCATCATCCCCAGAATCTGCAGCAAGGGTAAAGAGCCAGTTGAAAAGGCTCGCCCGACCAATGTACTCAAATCCACCTGTACATGGGGCTAGAATTGTTGCCGATGTTGTTGGAAACCCAGTTCTCTTTAATGAATGGAGAGCAGAAATGGAAATGATGGCTGGAAGGATCAAGAATGTTAGACAACAGCTATACAATAGTATTACTTCAAAAGACAACAGTGGAAAAGACTGGTCATTTATACTTAAGCAGATAGGCATGTTCTCATTCACTGGCTTGAACAAGGACCAGACTGACAACATGACAAATAAGTGGCATGTATACATGACAAAGGATGGAAGGATTTCCCTGGCAGGATTGTCGTTGGCTAAATGTGAATACCTTGCAGATGCTATTATAGACTCGTATCATAATGTCAGCTGA 1452 0.4353 MRQPSSSVSQKRIYFISSSSYEMASSVLSAALNSLSPSYSLSSRQTHKGKPKTGGNALRFNNSFPNARSSGRVMAVSVNVSRFEGIPMAPPDPILGVSEAFKADTSDVKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNKEYLSIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFAGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKSAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVARGMEVLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRLARPMYSNPPVHGARIVADVVGNPVLFNEWRAEMEMMAGRIKNVRQQLYNSITSKDNSGKDWSFILKQIGMFSFTGLNKDQTDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00548 483 PRINTS Aspartate aminotransferase signature 287 299 IPR000796 GO:0006520|GO:0008483
Phco2g00548 483 PRINTS Aspartate aminotransferase signature 424 442 IPR000796 GO:0006520|GO:0008483
Phco2g00548 483 PRINTS Aspartate aminotransferase signature 355 380 IPR000796 GO:0006520|GO:0008483
Phco2g00548 483 PRINTS Aspartate aminotransferase signature 256 275 IPR000796 GO:0006520|GO:0008483
Phco2g00548 483 PANTHER ASPARTATE AMINOTRANSFERASE 77 481 IPR000796 GO:0006520|GO:0008483
Phco2g00548 483 SUPERFAMILY PLP-dependent transferases 81 477 IPR015424 -
Phco2g00548 483 Gene3D - 141 382 IPR015421 GO:0003824
Phco2g00548 483 MobiDBLite consensus disorder prediction 39 59 - -
Phco2g00548 483 Gene3D Aspartate Aminotransferase, domain 1 86 475 IPR015422 GO:0003824
Phco2g00548 483 FunFam Aspartate aminotransferase 141 382 - -
Phco2g00548 483 FunFam Aspartate aminotransferase 369 475 - -
Phco2g00548 483 Pfam Aminotransferase class I and II 109 475 IPR004839 GO:0009058|GO:0030170
Phco2g00548 483 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 325 338 IPR004838 GO:0003824|GO:0009058|GO:0030170
Phco2g00548 483 CDD AAT_like 110 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00548 Phco-Chr2 5246999 5257330 Dispersed