Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00540 ATGGATGCATCCACAACTTCTTATGATAAAAAAATGTCCCTCCAAACACTCATTTTCACACCCCTTTTGGTTCTATTCATGAGTATGTATTCTCATGCTCTTGTCCAACCTTCTAGTTGGAAATACGCACCAAACAAGGGAGGTGTTAGAGCTGCGTATTGGCCTTCTGGTGATGACCTTTCACCCTCTTCCATTGACACAAAATACTTCACTCACATCTACTATGCCTTCATCCAACAAGACCCTCAATTTTTCCACCTCAGCGTCACCCAATTTGAGAAAAAATGGATTCCACAGTTCATCAATGGCCTCCGCCACCGTTACCCGCCGGTCAAAACTCTCTTGTCAATTGGCGGAGGTGGCAGCAACTCAACCGCCTTCTCCCTCATGGCCACCACCAAACACACCCGACAAGTGTTCATCAACTCCACCATCCACGTGGCGCGCCAATACGGTTTCGACGGTCTCGATTTGGACTGGGAGTTCCCAGGAAACGAGGTCGATATGTCTAACCTAGGTATCTTGTTTCATGAATGGCGTCAAGCTATAACGGTGGAAGCACACACTTGTAGAAAACCGCCACTACTTTTAACAGCAGCCGTTTATTACGCTTCCACCATCAAACTCATTGGTAATGGGCCAAGAACATATCCAATTCAACCCATTCGTGATTACTTGGATTGGGCCAGCCCAATGTGCTTTGACTATCATGGGGCTTGGGACAATTTTACAGGCTTTAATGCTGCTCTGTATGATCCAAATTCCAACATAAGTACTAAGTATGGGATTGGATCTTGGATCGAAGCGGGTATGCCCGCCCATAAATTGGTTATGGGTTTACCCTTATATGGGCGAACATGGAGGCTTAAAGATCCGAATGTTGATGGGGTTGGAGCAGAAGCTGTTGGGGCAGCCACTGATACGGATGGTACTTTGGATTATGATGAAATTTTGGTGTTCAACAAAGAAAATGGTGCCACTGTTGTGTATGATGATGTAGCTGCGTCTTTCTACTCTTATGCGGGTACGACTTGGATCGGGTATGATGATGGACCATCCATAACAAAGAAGGTTCACTTTGCTAAGGTTTCGGGCTTGAAGGGCTATTTCTTTTGGGCTGTTGGAAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCAAATGCATGGGGAAATTGA 1179 0.4555 MDASTTSYDKKMSLQTLIFTPLLVLFMSMYSHALVQPSSWKYAPNKGGVRAAYWPSGDDLSPSSIDTKYFTHIYYAFIQQDPQFFHLSVTQFEKKWIPQFINGLRHRYPPVKTLLSIGGGGSNSTAFSLMATTKHTRQVFINSTIHVARQYGFDGLDLDWEFPGNEVDMSNLGILFHEWRQAITVEAHTCRKPPLLLTAAVYYASTIKLIGNGPRTYPIQPIRDYLDWASPMCFDYHGAWDNFTGFNAALYDPNSNISTKYGIGSWIEAGMPAHKLVMGLPLYGRTWRLKDPNVDGVGAEAVGAATDTDGTLDYDEILVFNKENGATVVYDDVAASFYSYAGTTWIGYDDGPSITKKVHFAKVSGLKGYFFWAVGKDKDWTISRQASNAWGN 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00540 392 FunFam Class V chitinase CHIT5b 282 348 - -
Phco2g00540 392 PANTHER CHITINASE 45 391 - -
Phco2g00540 392 Gene3D Glycosidases 63 378 - -
Phco2g00540 392 Gene3D - 282 348 IPR029070 -
Phco2g00540 392 Pfam Glycosyl hydrolases family 18 52 377 IPR001223 GO:0005975
Phco2g00540 392 SUPERFAMILY Chitinase insertion domain 283 348 IPR029070 -
Phco2g00540 392 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 48 392 IPR001223 GO:0005975
Phco2g00540 392 SUPERFAMILY (Trans)glycosidases 47 390 IPR017853 -
Phco2g00540 392 SMART 2g34 48 377 IPR011583 GO:0008061
Phco2g00540 392 CDD GH18_plant_chitinase_class_V 49 383 - -
Phco2g00540 392 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 153 161 IPR001579 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00540 Phco-Chr2 5135613 5137450 Dispersed