LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g00539	ATGACTGTGGTGGAGGATAGAATGGATGACCTCAGAGACGAGTTTCCCATAGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCAAGATTCTGGAGACTATGCTGCGAAGGTGCCAATATCATGTAACTACCACCAAAAATGCAAAAACTGCATTGAATCTGTTGAGAGGAAATGAAAATAGGTTTGACCTGGTAATCAGCGATGTACAAATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTCGTGGGACTTGAGATGGACCTACCTGTCATAATGATGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGACTTAAGGAGGTACAGAACATATGGCAGCATGTTGTCAGAAGGAGGACGAGTGATTCGAAGGAGCGGAGCAAAAGCAGCAACCAAGACAGGGCTAATAATACTGATAGCAATGAAAGAGGTTCTGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCAGAAAGAGGAAGGATGAGGATGACTATGATAATGATGAACAAGAGAATGGCCATGACAATGAGGAGTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGACTGTGGACCTGCACCAAAAGTTTGTTTCTGCTGTTGATCAATTAGGCTTTGACAAAGCTGTGCCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATTTAGGCTTTATCTGAAAAGAAGGAGCTGTGCGGCGAACCGAGAAGCTAATATGGTGGCAGCCTTAGGCACTACAGATTCATCCTTTTTGACAATGGGTTCTCTGAGTGGGGTTGGACATTTGCAGTCACTAACTGGTGCTCAACATTTTCATAACAATACTTTCAGACCCTTTGGACCTGGGGGGATGTCTGGTAGATTGAACACTTCTGTTGGTGTGAATTTGCATGGATTGCCTACTTCAGAAACTTTTCATTTGGGCCATGCACATAATTTTCACAAATCTATGCATGATCCACTTAAGTTCCAACAAGCCATAACTGGTGGTAATCAGAATGTTATTCAGGGAATGCCAATGTCTACAGGTCTTGATCAATTTCAACGTAAGGGTGTGTGCATTGGTGTTAGACCGATTCAAAGCATTTCCCCTTTTATTGATGTTCAACCAAATTTTTCCTTGTCAAATAAACTCCCAGATCTGATGCCAAAATCAACAGTGGGTTGCTCAGCCTCTCCAGTTTTGGACGTCTCAAACAATGCTTTGGTATTGAAAGCTGATGGTGAAAACACACAAGGGGGTGGAGTGATATTTGGTCAAACTTCATTAGCCTCTCAGAATTCACAATTCTCATTGCCTTTGTTGGATCAGGGCAGGTGTAGTGATATTTGGTCAAATACTGTTCAGTCATCTGGGACAAATTCTTACCCTCCAAGTGAAACTTTTCAAGGGAGGAATCTGAGTGGTGCTTCATCCGTTACTTCACTGTCTAACCAATCCCTTGATTCACTAAAAGATATGCATTCTCAAGGAGTTCTTTTTGCAAATAATTCTGGACAAATAAGCAATAGTGTGGTACCATTTCAAGGGTGGGATGACAATAACGATGATAGTTCTTTCCCTTCAACTGTTTTTGGTAACTCAATAGACGCTCTGAATGATACAGATGGCCACACTTCTATTAACTCAATCTACAACAGAAACATGGACTTCAGTTTCTTTGATCCCTTACTGATGAAACCTGATGGAATTACGGGATTGAGTGAAGAAAACACATTGAAACAACAACAGGGGTACATCATGAACCATAACAAGTCTCAAAACAATAGCCCCGCTAATAATCTTGGTTCTCTGGAAGAATTTGTTAGTTCAATGATGAAACAGAAACAAGAGAATGTGAAATTATTAGAAGGATACTTATGCGACAACAATTACACTGACGGGACATCCATTTGA	1998	0.4084	MTVVEDRMDDLRDEFPIGMRVLAVDDDSTCLKILETMLRRCQYHVTTTKNAKTALNLLRGNENRFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVNDDPKMVMKGITHGACDYLLKPVRLKEVQNIWQHVVRRRTSDSKERSKSSNQDRANNTDSNERGSVATGNSDQNVKSSRKRKDEDDYDNDEQENGHDNEESSCHKKARVVWTVDLHQKFVSAVDQLGFDKAVPKKILDLMNVEKLTRENVASHLQKFRLYLKRRSCAANREANMVAALGTTDSSFLTMGSLSGVGHLQSLTGAQHFHNNTFRPFGPGGMSGRLNTSVGVNLHGLPTSETFHLGHAHNFHKSMHDPLKFQQAITGGNQNVIQGMPMSTGLDQFQRKGVCIGVRPIQSISPFIDVQPNFSLSNKLPDLMPKSTVGCSASPVLDVSNNALVLKADGENTQGGGVIFGQTSLASQNSQFSLPLLDQGRCSDIWSNTVQSSGTNSYPPSETFQGRNLSGASSVTSLSNQSLDSLKDMHSQGVLFANNSGQISNSVVPFQGWDDNNDDSSFPSTVFGNSIDALNDTDGHTSINSIYNRNMDFSFFDPLLMKPDGITGLSEENTLKQQQGYIMNHNKSQNNSPANNLGSLEEFVSSMMKQKQENVKLLEGYLCDNNYTDGTSI	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g00539	665	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	19	410	IPR045279	GO:0009736
	Phco2g00539	665	MobiDBLite	consensus disorder prediction	136	151	-	-
	Phco2g00539	665	Pfam	Myb-like DNA-binding domain	207	255	IPR001005	-
	Phco2g00539	665	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	204	261	IPR017930	-
	Phco2g00539	665	SUPERFAMILY	Homeodomain-like	202	262	IPR009057	-
	Phco2g00539	665	PIRSF	RR_ARR_type-B	1	661	IPR017053	GO:0003677\|GO:0003700\|GO:0009736
	Phco2g00539	665	SMART	REC_2	19	131	IPR001789	GO:0000160
	Phco2g00539	665	FunFam	Two-component response regulator	201	264	-	-
	Phco2g00539	665	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	205	258	IPR006447	GO:0003677
	Phco2g00539	665	Pfam	Response regulator receiver domain	21	128	IPR001789	GO:0000160
	Phco2g00539	665	Gene3D	-	18	157	-	-
	Phco2g00539	665	MobiDBLite	consensus disorder prediction	152	173	-	-
	Phco2g00539	665	ProSiteProfiles	Response regulatory domain profile.	20	135	IPR001789	GO:0000160
	Phco2g00539	665	CDD	REC_typeB_ARR-like	21	135	-	-
	Phco2g00539	665	Gene3D	-	201	263	-	-
	Phco2g00539	665	MobiDBLite	consensus disorder prediction	136	202	-	-
	Phco2g00539	665	SUPERFAMILY	CheY-like	18	144	IPR011006	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g00539	Phco-Chr2	5117733	5121793	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Phco2g00539		Response_reg	1.3e-23	CL0304

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g00539	2	5117733	5121793	Phco7g00708	7	5427496	5431358	PCT