Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00539 ATGACTGTGGTGGAGGATAGAATGGATGACCTCAGAGACGAGTTTCCCATAGGAATGCGTGTTCTTGCTGTTGATGATGACTCAACATGTCTCAAGATTCTGGAGACTATGCTGCGAAGGTGCCAATATCATGTAACTACCACCAAAAATGCAAAAACTGCATTGAATCTGTTGAGAGGAAATGAAAATAGGTTTGACCTGGTAATCAGCGATGTACAAATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTCGTGGGACTTGAGATGGACCTACCTGTCATAATGATGTCTGTAAATGATGACCCTAAGATGGTGATGAAGGGAATTACACATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGACTTAAGGAGGTACAGAACATATGGCAGCATGTTGTCAGAAGGAGGACGAGTGATTCGAAGGAGCGGAGCAAAAGCAGCAACCAAGACAGGGCTAATAATACTGATAGCAATGAAAGAGGTTCTGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCAGAAAGAGGAAGGATGAGGATGACTATGATAATGATGAACAAGAGAATGGCCATGACAATGAGGAGTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGACTGTGGACCTGCACCAAAAGTTTGTTTCTGCTGTTGATCAATTAGGCTTTGACAAAGCTGTGCCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATTTAGGCTTTATCTGAAAAGAAGGAGCTGTGCGGCGAACCGAGAAGCTAATATGGTGGCAGCCTTAGGCACTACAGATTCATCCTTTTTGACAATGGGTTCTCTGAGTGGGGTTGGACATTTGCAGTCACTAACTGGTGCTCAACATTTTCATAACAATACTTTCAGACCCTTTGGACCTGGGGGGATGTCTGGTAGATTGAACACTTCTGTTGGTGTGAATTTGCATGGATTGCCTACTTCAGAAACTTTTCATTTGGGCCATGCACATAATTTTCACAAATCTATGCATGATCCACTTAAGTTCCAACAAGCCATAACTGGTGGTAATCAGAATGTTATTCAGGGAATGCCAATGTCTACAGGTCTTGATCAATTTCAACGTAAGGGTGTGTGCATTGGTGTTAGACCGATTCAAAGCATTTCCCCTTTTATTGATGTTCAACCAAATTTTTCCTTGTCAAATAAACTCCCAGATCTGATGCCAAAATCAACAGTGGGTTGCTCAGCCTCTCCAGTTTTGGACGTCTCAAACAATGCTTTGGTATTGAAAGCTGATGGTGAAAACACACAAGGGGGTGGAGTGATATTTGGTCAAACTTCATTAGCCTCTCAGAATTCACAATTCTCATTGCCTTTGTTGGATCAGGGCAGGTGTAGTGATATTTGGTCAAATACTGTTCAGTCATCTGGGACAAATTCTTACCCTCCAAGTGAAACTTTTCAAGGGAGGAATCTGAGTGGTGCTTCATCCGTTACTTCACTGTCTAACCAATCCCTTGATTCACTAAAAGATATGCATTCTCAAGGAGTTCTTTTTGCAAATAATTCTGGACAAATAAGCAATAGTGTGGTACCATTTCAAGGGTGGGATGACAATAACGATGATAGTTCTTTCCCTTCAACTGTTTTTGGTAACTCAATAGACGCTCTGAATGATACAGATGGCCACACTTCTATTAACTCAATCTACAACAGAAACATGGACTTCAGTTTCTTTGATCCCTTACTGATGAAACCTGATGGAATTACGGGATTGAGTGAAGAAAACACATTGAAACAACAACAGGGGTACATCATGAACCATAACAAGTCTCAAAACAATAGCCCCGCTAATAATCTTGGTTCTCTGGAAGAATTTGTTAGTTCAATGATGAAACAGAAACAAGAGAATGTGAAATTATTAGAAGGATACTTATGCGACAACAATTACACTGACGGGACATCCATTTGA 1998 0.4084 MTVVEDRMDDLRDEFPIGMRVLAVDDDSTCLKILETMLRRCQYHVTTTKNAKTALNLLRGNENRFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVNDDPKMVMKGITHGACDYLLKPVRLKEVQNIWQHVVRRRTSDSKERSKSSNQDRANNTDSNERGSVATGNSDQNVKSSRKRKDEDDYDNDEQENGHDNEESSCHKKARVVWTVDLHQKFVSAVDQLGFDKAVPKKILDLMNVEKLTRENVASHLQKFRLYLKRRSCAANREANMVAALGTTDSSFLTMGSLSGVGHLQSLTGAQHFHNNTFRPFGPGGMSGRLNTSVGVNLHGLPTSETFHLGHAHNFHKSMHDPLKFQQAITGGNQNVIQGMPMSTGLDQFQRKGVCIGVRPIQSISPFIDVQPNFSLSNKLPDLMPKSTVGCSASPVLDVSNNALVLKADGENTQGGGVIFGQTSLASQNSQFSLPLLDQGRCSDIWSNTVQSSGTNSYPPSETFQGRNLSGASSVTSLSNQSLDSLKDMHSQGVLFANNSGQISNSVVPFQGWDDNNDDSSFPSTVFGNSIDALNDTDGHTSINSIYNRNMDFSFFDPLLMKPDGITGLSEENTLKQQQGYIMNHNKSQNNSPANNLGSLEEFVSSMMKQKQENVKLLEGYLCDNNYTDGTSI 665
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00539 665 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 410 IPR045279 GO:0009736
Phco2g00539 665 MobiDBLite consensus disorder prediction 136 151 - -
Phco2g00539 665 Pfam Myb-like DNA-binding domain 207 255 IPR001005 -
Phco2g00539 665 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 261 IPR017930 -
Phco2g00539 665 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Phco2g00539 665 PIRSF RR_ARR_type-B 1 661 IPR017053 GO:0003677|GO:0003700|GO:0009736
Phco2g00539 665 SMART REC_2 19 131 IPR001789 GO:0000160
Phco2g00539 665 FunFam Two-component response regulator 201 264 - -
Phco2g00539 665 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Phco2g00539 665 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Phco2g00539 665 Gene3D - 18 157 - -
Phco2g00539 665 MobiDBLite consensus disorder prediction 152 173 - -
Phco2g00539 665 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Phco2g00539 665 CDD REC_typeB_ARR-like 21 135 - -
Phco2g00539 665 Gene3D - 201 263 - -
Phco2g00539 665 MobiDBLite consensus disorder prediction 136 202 - -
Phco2g00539 665 SUPERFAMILY CheY-like 18 144 IPR011006 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco2g00539 Phco-Chr2 5117733 5121793 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Phco2g00539 Response_reg 1.3e-23 CL0304
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00539 2 5117733 5121793 Phco7g00708 7 5427496 5431358 PCT