Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00537 ATGAGTAGCTCAATTAAACTTCGTGAAAGATCGAATTTGAGACCCCGTTATACTGTTGATGAGTCAGATGAGGAGGATCTAGTTATTTCCCCTAGAAAACATGGGAAATCTACAGAAAAAGATGTAGAAGTTGATGGAAATGACACTAATGTTGAAGGTCTTCGTGGAAGATCCAGTCAAAGGAAGAAAAAATATACTATTGATGATTCTGATGACGACGATTCAGTTATTCTCCCTAGGAAACGTGGGAGACCTAGACAAAATATTAAGAAAATTGATACAAGTGATACTAATGAGAGTGGCATGGTTGAGCGGCTTCGTGAGAGATCCAGTAAAAAGAAGCCAAATTATACTCTTTATGAGTCAGATGAAGATGCAGATCTTTTACTCAGCAAAAACCTTGAAGAAAACATCGTGAAAATTGAAAGAAGTGACACTGTAGTACCCCAGTCAGCCATGATTTCCCACCATTGCTCAAATCATGTTTTTACATATTCGTTTGGTATCTGGCAACAGATACAGAATTCATGTCAAGCTTGTGGAAAAAAAGGAGATCTTCTGAGCTGTGAGACATGCACCTACTCTTTCCATCCAAGTTGTATACTCTCACCAGTTAGAAGCCTCATTCGAGACAATTGGAGGTGCCCTCAGTGTGCTAGCCCACTTAATGGTATTGATAAGATATTAGATTGTGCGATGCGTTCTGTGGTAGCAGCTGGTGAAAGTGATGCAACAAAGCTGGAGTCAAAGCAATATCTTGTTAAGTGGAAGGGACTCTCGTATTTGCACTGCACATGGGTTCCTGAAGAAGAGTTTTTGAAGGCTTACAAGAATCAGCCAGGTCTAAAGATCAAAGTAAACAGCTTCCATCGTCGTATAGCATCAGCCAAAAATCCTAACGAAGATTTTGTTCCCATTAGATCTGAATGGACTATGGTTGATCGAATTGTTGCTTGCAGTGGTAGCGATGACAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATATGATGAGTGCTATTGGGAGCTGGAGTCAGATATCTCGGCATTTCAAACAGAAATAGAAAGATTCAACACATTTCAGTCTAGATCAAGGAAAGTTTCGTCTAGTAAGAAAAGTAGTATTCAGGATGGTTCTGAATCGAATAATCTGCAGAAAGAATTTTTACAGTACGAAAATAGCCCACAATTTCTTTCAGGGGGTTCACTACATCCATATCAACTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACTATTCAAAGTATTGCTTTCTTAGCATCTCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTAAGAAACTGGGAACGTGAATTTGCAACTTGGGTACCTCACATGAATGTTGTTATGTATTTTGGATCTGCTAAAGCTCGTGCTATAATCAGAGAGTATGAGTTTTACTTTCAGAAGAATCAAAAGCGGAGCAAGAAAAACAAGTCTAAAAAAAATAAAAAGATTGTTGATGACAGCAAACAAGGAAGGATAAAGTTTGATGTCCTTTTGACCTCATATGAGATGATAAATTCTGATTCATCATCGTTGAAACCTATAAAGTGGGAGAGCATGATAGTTGATGAGGGTCACCGTCTGAAAAACAAGGATTCTAGATTATTTTCTTCATTGAAGCAATATTCCACCAAACATCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTGTTTATGCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAGGATATCAACAGAGAGGAGCAGATTTTGAGACTGCATAAAATGTTGGCTCCACATCTCTTGCGAAGAATGAAGAAAGATGTGTTGATAGAACTACCTCCAAAAAAGGAACTTATTTTACGAGTTGAACTAAGCAGTCTACAGAAAGAATACTACAAGGCAATTTTGACTCGTAATTATGAGATATTAACCCGCCAAGGTGGTGCACAAGTTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTCATGTTACAAGGAGTTCAACCAGATCTTAATGATGAAAAAGAAGCATATGAGCAATTGCTTGAATCATCTGGGAAGTTGCAGTTGTTGGACAAGTTGATGGTGAAACTTAAAGAGCAAGGTCACAGAGTTCTTATATATTCCCAATTTCAGAGAATGCTTGACTTGCTTGAAGAATACTGTTCTTACAAGCAATGGCAATATGAGAGGATAGATGGCAAGGTTGGAGGAGCTGAAAGACAAGTAAAGATAGATTGGTTTAATGCTGAAGATTCTTCAAGATTTTGTTTCCTTCTTTCTACTAGAGCCGGGGGTTTGGGGATAAACCTTACTACAGCTGACACAGTTATTCTATACGACAGTGACTGGAATCCTCATGCCGATTTACAAGCCATGGCCAGGGCGCATCGCCTAGGACAAACGCGGAAGGTCATGGTGTATAGGCTTATAACAAGGGGAACAATTGAAGAGAAGATGATTCAGATGACCAAGAAGAAAATGGTCTTAGAACACCTTGTTGTAGGGAGGCTACAGTCTGAAAACATCAAACAGGAGGAGCTAGATGATATTGTAAGATACGGCTCAGAGGAATTATTTGCCGATGAAAATGATGAAGCAGGCAAGTCTCGCCAAATTCATTACGATGCTGATGCAATAGATAGATTGCTGAATCGTGATGAAGTTGGACATGAAGAGGCGCCTGCTTTGGATGATGAAGATGGATTTCTGAAGGCCTTCAAGGTAGCAAACTTCGAATACATCGAGGAGGCCGAGGCAGCAGAGGAGGCGGCAGAAAATGTAACAACGGAGAATCAATCCTCTGCTGCCAGTTTGAAAAAGGCAAATCACTGGGAAGAGCTGTTGAAAGAAAGATATGAACAGCAGAAAGGTGAAGAGTTAAATGCCTTAGGCAAAGGGAAGCGAACCTGCACCAAGTGGCAGGGGGAAGCCTCTAGTCGTTGGGGAGATCTAAGCTCTGATGGTGAAGATGTTGAAGACGACAATTATGAAGTGGATCATAGTGAAGATGATTCAACTTCATTTGATACTACTAGAAGGCCTCACAAAACCAAAGTTCGCGCAGAGAGCCCAGAGCCACGTCCTTTAATGGAAGGGCAAGGCAAATCGCTGAAAGTACTTGGTTTTAGTCAAAATCAGAGGGCTGATTTTGTTCAAATTTTAATGAGGTTTGGGGTTGGTGATTTCGATTGGTCAGAGTTTACTGCCCGCATTAAACAGAAGAGTTTTGAAGAAATCCACGAGTATGGACAACTTTTGTTGTCTCATATATCAGAAGAAATTACTGATTCCCCTACATTCTCAGATGGAGTTCCAAAAGAAGGACTTCACATACAAGATATACTTGTAAGGATTGCTGCTCTGCTCTTGATAAGAGAAAAAGTGAAGTTTAAATCAGAAAATCCTGGAACTCCACTTTTTTCAGATGATATCTTATCACGCTACCCAGGTCTGAAGTGTACAAAGATATGGAAGGAGGAGCACGATTTAGTGCTACTGCATGCCATCTTGAAGCATGGTTATGCAAGGTGGCATGATATTGTTGAAGATAAGGATCTGAAGATTCAGAAGGTCATCTGCCAGGAGTTGAATATTCCAGTTGTAGATGTACCACTTCAACTACAGTCCGACTCACGAGTGCACAATAGTCCAAATATGACAAATGTGCAGTCGAGCTTCTTCCAATCTAAGAAGAGTGGTGCGTGTGGTTCTAGTCGTCGTGGGAAGAAAGTCCCAGCATACCGTAAACCCGTCGTGTGCCAGGAGTATAGACAAATGCAGAAAGCACAGATGGAGTTTATAAAGAGAAGGTTTCGTCTCTTGGAGAATGGTCTCAACGCTGAGTGCCAGAAGGAATACTATAGTGATCCGAAACCAAATGTGCTGGAGACTGAAGAACTTAAAGGTAAAGGCCCGCGTGCAGATGTCCCAGAGCATATCGTATCTGAGACTGACGAAAGTGTGGATGATCATCTGCCTCGTGTCAAAGGAATAGACACTGAGGATATTTATAATTCTGCATGTGACTTTGAACCAGATCGTCTGCAATTAGTATCTCTTTACAATGAGATGTGCACGACTGTGGAGGAAAGCGCCATTGGTTTAGTCCAAACGGCAACAGAAGATGCACAACAGCACGCTATTCAGAACTTGGGTCTACTCCAAAGCATTTCTGCAGATATCAATGCAATTCTAAAGGGTAAAGACATTGCAGATTAA 4350 0.4064 MSSSIKLRERSNLRPRYTVDESDEEDLVISPRKHGKSTEKDVEVDGNDTNVEGLRGRSSQRKKKYTIDDSDDDDSVILPRKRGRPRQNIKKIDTSDTNESGMVERLRERSSKKKPNYTLYESDEDADLLLSKNLEENIVKIERSDTVVPQSAMISHHCSNHVFTYSFGIWQQIQNSCQACGKKGDLLSCETCTYSFHPSCILSPVRSLIRDNWRCPQCASPLNGIDKILDCAMRSVVAAGESDATKLESKQYLVKWKGLSYLHCTWVPEEEFLKAYKNQPGLKIKVNSFHRRIASAKNPNEDFVPIRSEWTMVDRIVACSGSDDKKEYLVKWKELPYDECYWELESDISAFQTEIERFNTFQSRSRKVSSSKKSSIQDGSESNNLQKEFLQYENSPQFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWVPHMNVVMYFGSAKARAIIREYEFYFQKNQKRSKKNKSKKNKKIVDDSKQGRIKFDVLLTSYEMINSDSSSLKPIKWESMIVDEGHRLKNKDSRLFSSLKQYSTKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRMKKDVLIELPPKKELILRVELSSLQKEYYKAILTRNYEILTRQGGAQVSLINVVMELRKLCCHPFMLQGVQPDLNDEKEAYEQLLESSGKLQLLDKLMVKLKEQGHRVLIYSQFQRMLDLLEEYCSYKQWQYERIDGKVGGAERQVKIDWFNAEDSSRFCFLLSTRAGGLGINLTTADTVILYDSDWNPHADLQAMARAHRLGQTRKVMVYRLITRGTIEEKMIQMTKKKMVLEHLVVGRLQSENIKQEELDDIVRYGSEELFADENDEAGKSRQIHYDADAIDRLLNRDEVGHEEAPALDDEDGFLKAFKVANFEYIEEAEAAEEAAENVTTENQSSAASLKKANHWEELLKERYEQQKGEELNALGKGKRTCTKWQGEASSRWGDLSSDGEDVEDDNYEVDHSEDDSTSFDTTRRPHKTKVRAESPEPRPLMEGQGKSLKVLGFSQNQRADFVQILMRFGVGDFDWSEFTARIKQKSFEEIHEYGQLLLSHISEEITDSPTFSDGVPKEGLHIQDILVRIAALLLIREKVKFKSENPGTPLFSDDILSRYPGLKCTKIWKEEHDLVLLHAILKHGYARWHDIVEDKDLKIQKVICQELNIPVVDVPLQLQSDSRVHNSPNMTNVQSSFFQSKKSGACGSSRRGKKVPAYRKPVVCQEYRQMQKAQMEFIKRRFRLLENGLNAECQKEYYSDPKPNVLETEELKGKGPRADVPEHIVSETDESVDDHLPRVKGIDTEDIYNSACDFEPDRLQLVSLYNEMCTTVEESAIGLVQTATEDAQQHAIQNLGLLQSISADINAILKGKDIAD 1449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00537 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 640 IPR027417 -
Phco2g00537 1449 ProSiteProfiles Chromo and chromo shadow domain profile. 311 373 IPR000953 -
Phco2g00537 1449 Pfam CHDCT2 (NUC038) domain 1198 1232 IPR012957 -
Phco2g00537 1449 MobiDBLite consensus disorder prediction 9 81 - -
Phco2g00537 1449 SUPERFAMILY Chromo domain-like 298 363 IPR016197 -
Phco2g00537 1449 ProSitePatterns Rubredoxin signature. 209 219 IPR018527 GO:0046872
Phco2g00537 1449 ProSitePatterns Zinc finger PHD-type signature. 177 218 IPR019786 -
Phco2g00537 1449 Pfam CHD subfamily II, DUF1087 963 1013 IPR009463 -
Phco2g00537 1449 SUPERFAMILY Chromo domain-like 189 296 IPR016197 -
Phco2g00537 1449 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 21 1364 - -
Phco2g00537 1449 Gene3D - 396 649 IPR038718 -
Phco2g00537 1449 CDD CD2_tandem 309 358 - -
Phco2g00537 1449 SMART ultradead3 400 616 IPR014001 -
Phco2g00537 1449 Gene3D - 224 294 - -
Phco2g00537 1449 Pfam PHD-finger 177 219 IPR019787 -
Phco2g00537 1449 ProSiteProfiles Chromo and chromo shadow domain profile. 223 301 IPR000953 -
Phco2g00537 1449 CDD SF2_C_SNF 728 854 - -
Phco2g00537 1449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 897 IPR027417 -
Phco2g00537 1449 SMART PHD_3 176 219 IPR001965 -
Phco2g00537 1449 Pfam CHD subfamily II, SANT-like domain 1054 1186 IPR009462 GO:0003677|GO:0006338
Phco2g00537 1449 Coils Coil 954 974 - -
Phco2g00537 1449 CDD CD1_tandem 221 291 - -
Phco2g00537 1449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 416 605 IPR014001 -
Phco2g00537 1449 SMART DUF1087_2 962 1037 IPR009463 -
Phco2g00537 1449 MobiDBLite consensus disorder prediction 1045 1069 - -
Phco2g00537 1449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 223 IPR013083 -
Phco2g00537 1449 Pfam Chromo (CHRromatin Organisation MOdifier) domain 312 359 IPR023780 -
Phco2g00537 1449 Pfam Chromo (CHRromatin Organisation MOdifier) domain 242 275 IPR023780 -
Phco2g00537 1449 SMART chromo_7 222 287 IPR000953 -
Phco2g00537 1449 SMART chromo_7 309 363 IPR000953 -
Phco2g00537 1449 SMART helicmild6 759 843 IPR001650 -
Phco2g00537 1449 Pfam Helicase conserved C-terminal domain 730 843 IPR001650 -
Phco2g00537 1449 Gene3D - 301 360 - -
Phco2g00537 1449 ProSiteProfiles Zinc finger PHD-type profile. 174 221 IPR019787 -
Phco2g00537 1449 Pfam SNF2-related domain 424 706 IPR000330 GO:0005524|GO:0140658
Phco2g00537 1449 Coils Coil 610 630 - -
Phco2g00537 1449 MobiDBLite consensus disorder prediction 1020 1076 - -
Phco2g00537 1449 MobiDBLite consensus disorder prediction 1 114 - -
Phco2g00537 1449 Gene3D - 650 874 IPR027417 -
Phco2g00537 1449 MobiDBLite consensus disorder prediction 88 114 - -
Phco2g00537 1449 Gene3D - 1156 1329 - -
Phco2g00537 1449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 733 892 IPR001650 -
Phco2g00537 1449 SMART DUF1086_2 1037 1189 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00537 Phco-Chr2 5077525 5091229 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco2g00537 SNF2_N 1.7e-63 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00537 2 5077525 5091229 Phco7g00706 7 5405176 5424370 PCT