Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00531 ATGTTGCTAAGAAACCCTTTATACACAAACCCAGAACCTTGTCAGCACCTTGCTGAGTACAAGCTCAAGCATGGTTTCAGTGGCTACAAAGCCATCCAAAAGCTCCTTGTGAGCTCTCCAATTGGGAAAACCAGTGTGAAGAAACCCAACACAAAGGTACCCAGATGCAGTTTCTGTAATGGCTGTGAAGGGAGGTTCTATTTGTGTCTGATTTGCTCTTCATTCTCATGTTTGGATCACACCATTCTGCACTCTCAATCAGAAACTGGTCATGCTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCTGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAATGGGGGTGGCAAGTGGTGCCACTGGGAATGAAAGCATTGGGCAGAGGTTGATCAAGAGGAGGAGATTGGTTTCTGGGGTTGGGTTGAATTTTCAGAAATCTAAGTTTGGAGTTTCCACCAAAGATGTGAGAGCTAAATCATGTTATCCTATGGGGTTGAGGGGATTGAACAATCTGGGTAGCACGTGTTTTATGAATTCTGTACTCCAAGTGTTACTTCATGCACCTCCTGTCAGGGACTATTTCCTGAGTGGTGAACACAGATTGGAAGCTTGTCATCGGAGAAGAACCACAGATCTGATGTGTTTGCTTTGTGAAGTCAATGCTATTTTCTCAGCTGTGTATTCGGGGGATCAGAATCCATATACTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCTATCCATGAGAAAGAGGGGAAAGCAAGGAATGGAAGCAAAGGTAACGAAGACTGTCAATGCATTGCTCATAGGGTGTTCTATGGATTATTGAGATCAGATGTTACTTGTATGGCCTGTGGATTCACCTCAACAACCTATGATCCTTGTGTTGACATTTCACTTAACTTGGACACTAGTGTCTCTTCCACAGAAAAGGGTAAAAAGCTTACGAAACGGAATGAGGATGGAAGTATGTCTACACTTTCGGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGGTCAGACCAGAAGCTTTACTGCCAGAATTGTCAGGAAAAGCAGGACTCTTTGAAGCAAATGTCCATTAGAAAGCTTCCATTAGTACTTAGTTTACATGTAAAACGATTTGAGCACTCTTTTGTCAAAAGGTCTTCAAGAAAAATAGATCGCTACCTGCACTTCCCATTTTCCTTAGACATGTCTCCATATTTGTCCTCCTCAATCCTTAGAGCCAGATATGGAAATAGAATTTATTCTTTTGGGGCTGATGAATCAGATATATTTTCAGAGTTCGAAATTTTTGCTGTGGTGACACATTCGGGTACGCTCGAGTCTGGCCATTATGTTTCGTTTGTGCGTATAAGGAATCAATGGTACAAATGTGATGATGCTTGGATAACTGAGGTTGATGAGGCTACAGTCAGAGCTTCACAGTGTTACATGATTTTCTATGTGCAGAAAACTTTGTACAATAAAGCAAATGAAGACCAGAGTCACGCACCAAATTGCCCTGGAAGAGAGCTATTTTTTCCTATTGCTGGTTTTTGCTAG 1659 0.4219 MLLRNPLYTNPEPCQHLAEYKLKHGFSGYKAIQKLLVSSPIGKTSVKKPNTKVPRCSFCNGCEGRFYLCLICSSFSCLDHTILHSQSETGHAVFVDIERAELYCGVCCDQLYDPDFDQVVMSKHSMGVASGATGNESIGQRLIKRRRLVSGVGLNFQKSKFGVSTKDVRAKSCYPMGLRGLNNLGSTCFMNSVLQVLLHAPPVRDYFLSGEHRLEACHRRRTTDLMCLLCEVNAIFSAVYSGDQNPYTPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKARNGSKGNEDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTSVSSTEKGKKLTKRNEDGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCQEKQDSLKQMSIRKLPLVLSLHVKRFEHSFVKRSSRKIDRYLHFPFSLDMSPYLSSSILRARYGNRIYSFGADESDIFSEFEIFAVVTHSGTLESGHYVSFVRIRNQWYKCDDAWITEVDEATVRASQCYMIFYVQKTLYNKANEDQSHAPNCPGRELFFPIAGFC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00531 552 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Phco2g00531 552 SUPERFAMILY Cysteine proteinases 175 522 IPR038765 -
Phco2g00531 552 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 95 522 - -
Phco2g00531 552 SUPERFAMILY RING/U-box 13 118 - -
Phco2g00531 552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 523 IPR028889 -
Phco2g00531 552 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
Phco2g00531 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 130 IPR013083 -
Phco2g00531 552 FunFam Ubiquitinyl hydrolase 1 8 129 - -
Phco2g00531 552 FunFam Ubiquitinyl hydrolase 1 173 528 - -
Phco2g00531 552 Pfam Ubiquitin carboxyl-terminal hydrolase 180 520 IPR001394 GO:0004843|GO:0016579
Phco2g00531 552 ProSiteProfiles Zinc finger UBP-type profile. 36 130 IPR001607 GO:0008270
Phco2g00531 552 Gene3D Cysteine proteinases 173 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00531 Phco-Chr2 4967172 4969806 Dispersed