Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00508 ATGCTTGTTGTGGTTGGAGTGTCGTGGGATCTGAATTGGTTCCTGCAACTGTTGCTCTCCGTGATCGTCGTGGCCGTTGGGGTTCACTTTTTCGTCAAGTCCACCGCTTCCAAGTACTTCGAGGTCGACGCCAATTTCGAAGGGGACCACCACCAAGCCCTCGCCGACGCAATGCCCGGCGTTCTCTCCTCCGCTGACGATTCTCTCTGCACCGTCTGCGCCGTCTGCGCCACTCCCAGCTCCAAGAAGTGCTCGCGCTGCAAAGCCGTCCTCTATTGCTCCCAAGAATGCCAGCAGTCGCATTGGAGGTCTGGGCATAAGACAGTATGCAAAGATTTCCGTGAAGTCGGTGCAAGAAGCCCGAGTCAAAATGGGGTAATTAATCGTGGGTTTAAGTCTTCTGCTGCTGGGGGAAAGAGCTCGATTGCGCTGATACCTGGTTGTGGAACAATTTATAGGCCAATCAAGCAGCCTAAAGATGTTCTTTTTCCCTATGATGAATTTGTCAACTTTTTTAACTGGAACAAGCCAGGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGTCACCGCAGAGAATGCAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGATAGAACAAGGCTAAGTTCACAGGTGTTTTCTCCTATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACTCTGGGCTATGGAAGACAAGAGGATGCTCACGAGTTTATGAGGTTTTCCATTGATACCATGCAATCTGTTTGCCTTGATGAGTTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTCCAGGAGACTACCCTTATTCAACACATATTTGGTGGCCGTCTACAATCTGAGGTGGTTTGCACAAAATGTGAAAAGATTTCAAAGCAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGATCAGTTTACTGCCAAGGAGCGACTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGCGCTCCAAATATTCTTACCATCGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAATAGCCTTCCCTGAGGCTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGATGTTTATAAGCTGTATGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGACTTCCTGGGGAACTGGTACAGGATTGATGACTGGAAGGTTACGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTTTTGTATAGCAGGTGTAGTGCCAGGCCATCAGGCCTTCAAATTCAAACTAGTGAATCTTCAGGGATAGCAGAAGTTCAAACAACAGAAGTGGAAGTGGACTCTGGACAAACTGAACAAGATGAATGCGTCCTCTCGAATATGAAGACGTTGACTTGTAGTAGCGGTTCTGAGGTTTTGCCATCTGATATTAGTCCAGACTCGAATGTTTCTTCCACATACGACTGCGAGTCTTCTGCTGAATTGAACTCAGAAGCCAAAAGAGAGCAGTTTGAGGATATGGGCATGATTAATGTTGATTTAACTGGTATTGCAAATGAAATTTCTTGTAGTGCTGTAGAATCAACATCTGTGCCTTTTTCTCAAACAGTCAATGATTTGGGGGATGTAGATATAACGGACAGATCATTTGAAGAGACTTCAGGCTGCAAGGAAGAGCAAGAAAATACTGATATGGTTAGGTCGTCTGGCCCTTGTCCTGGTTCACCAAATGACTCTTCCTTCTTTGATAAACATTCTTCTGTTTCAAGGGATCATCGAAACGTGGAAGAAGATTTAGAACACATAGCTGTGGTTGAAGGCAAGTTGATTACACCTAAAGATAATACATATTATGGTAATGGATATGTCAGTGCAAACGAGTCTTCTATTCCAGTTGAAGACGCTGGCAAAATTTCTGGCATCGGTTCTTCCCACTGA 2145 0.442 MLVVVGVSWDLNWFLQLLLSVIVVAVGVHFFVKSTASKYFEVDANFEGDHHQALADAMPGVLSSADDSLCTVCAVCATPSSKKCSRCKAVLYCSQECQQSHWRSGHKTVCKDFREVGARSPSQNGVINRGFKSSAAGGKSSIALIPGCGTIYRPIKQPKDVLFPYDEFVNFFNWNKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFENHVDRTRLSSQVFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVVCTKCEKISKQYENMMDLTVEIHGDAASLEECLDQFTAKERLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPEALNLSPYMSEAGDGSDVYKLYGVVVHIDMLNASFFGHYICYIKDFLGNWYRIDDWKVTTVELEEVLSQGAYMLLYSRCSARPSGLQIQTSESSGIAEVQTTEVEVDSGQTEQDECVLSNMKTLTCSSGSEVLPSDISPDSNVSSTYDCESSAELNSEAKREQFEDMGMINVDLTGIANEISCSAVESTSVPFSQTVNDLGDVDITDRSFEETSGCKEEQENTDMVRSSGPCPGSPNDSSFFDKHSSVSRDHRNVEEDLEHIAVVEGKLITPKDNTYYGNGYVSANESSIPVEDAGKISGIGSSH 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00508 714 Gene3D Cysteine proteinases 178 496 - -
Phco2g00508 714 ProSiteProfiles Zinc finger MYND-type profile. 70 110 IPR002893 -
Phco2g00508 714 FunFam Ubiquitin carboxyl-terminal hydrolase 15 176 496 - -
Phco2g00508 714 ProSitePatterns Zinc finger MYND-type signature. 70 110 IPR002893 -
Phco2g00508 714 CDD Peptidase_C19E 181 486 - -
Phco2g00508 714 MobiDBLite consensus disorder prediction 634 652 - -
Phco2g00508 714 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 99 490 - -
Phco2g00508 714 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 182 488 IPR028889 -
Phco2g00508 714 SUPERFAMILY HIT/MYND zinc finger-like 70 114 - -
Phco2g00508 714 SUPERFAMILY Cysteine proteinases 178 490 IPR038765 -
Phco2g00508 714 Pfam MYND finger 73 110 IPR002893 -
Phco2g00508 714 Gene3D - 63 115 - -
Phco2g00508 714 Pfam Ubiquitin carboxyl-terminal hydrolase 182 485 IPR001394 GO:0004843|GO:0016579
Phco2g00508 714 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 183 198 IPR018200 GO:0004843|GO:0006511
Phco2g00508 714 FunFam Ubiquitin carboxyl-terminal hydrolase 15 64 114 - -
Phco2g00508 714 MobiDBLite consensus disorder prediction 620 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00508 Phco-Chr2 4711436 4717817 Dispersed/Wgd