Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00507 ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGGACGTTGAAGTCCTCTCTTCAATGTGGCCAGAAGATATTGGCTCTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAAGGGACCAAGATATGTTGGAGGAAGTCACAATCTTGGAGGAGCCAACTATAGCTGATTTCCAGCGTCTGATGGAGCTTACAAATTACACAGATAAAGGGTCTTCTCAGCTGGCATATCTCATGCAACACTGGGAATATAAGCAGGCTAATGCAGTTCGGCTTCTCAGAGAGGAACTTGACAACCTTAGTAAACAAAGGAAGGAAGTTGAGCTCAGGAAATTGGAGATACTGAAAGACAATCGGTTTGAGGAAGAGAATTATGGCGGTGACAAGCGCCCAGTTTCTATATTGGATGAGATTTACTATACATGGCAAGATGTGCCAGTGCCTCTCAGGAAAAGTGATGTAGTTGTGCAAAACAAGAGGATTGAGATTGATGCTGAGTATGACACTGCTGTGTATTGGAAACAGCGGGCGCTGCAGTTGGAAAGACAGTTGGAGGCAAGTGTCAATAGAGAGCAGATACTAACGGACAAGTTGCAAGAAAGTATAAAGAATTTTGAAAGGCAATCTTCACCAGTGGAAGAACTAACTCAGATTCTGAAGAGAGCAGATAATTTCTTACATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGATATCGCTTTATCTACAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTTGAAATTTTCACTGGATCCGGTGTTAAGGAATCTCAAGATTTCAAGAGGGAAGTAATGGAGAAAGGGTTGCCTGCAAAAAAGGAAATTACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAACTATATGGGAATGGAAATAACAGATCAGGTAAGAAAAAGAGAAAGAATGGCAAAACTTAGGGAAGATATTGCAGTCCAGAAAGCCAAAGAAACGGAACTTAATAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTATCTGGAGTTGTTAGCATGGCTGAAATTCTTTCCACCACGAAACTTGATCGGGAACAAAGACAGCTTTTGAATGTCATGATATCTTCAGGAGATTTAGTTCTTCAACTTATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTGGTAAAACATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCTATTGAGGTTATTGGAGATGTTTTGAGGATTCGGCAGATCCTCACAAATTTAGTCAGCAATGCCGTAAAGTTTACACATGAAGGCAAAGTTGGTATCAACCTTTACGTTGTTTCAGAGCCACCTTTTGCCAAAGCAGAAGGCCATCAAAAGATGACCATAGACCAGTCAACAAATTCAGCACAAGGAGTGAAGGAAGAGAAAAATTGTCTTGTTGGTCAGAAACACAACGACCATCCTAGTCAAAATCATTCATTCAACGATGAATGTAGAACTTCAGTTAAAAGTGAATGCTCAATGAATGGAGATACTGAGGAGCAAACCCATTCCACTGAAACAACAGTGTGGATACGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGCATTACCTAATTTATTTAGAAGGTACATGCAAGTAAGTGCAGACCATGCTCGAAAATATGGCGGCACAGGTCTGGGGCTGGCAATATGCAAACAACTTGTTGAGTTAATGGGGGGTCGTTTAACAGTGTCTAGCAAAGAACATTGTGGCTCTACCTTCACATTCATACTTCCCTACAAAGTTTCAACGGCTTGTGATAATTCTGATGACCCAGATGAACTATCAGATGTGGATGATAATGACGAGGATACCACAGAGGGGTTCTTCCAATTCCAACCACGCACTTTAGGCTCTCTCTTCTCTTCTAAAGGACCTACCAGGCCCCAAAATTTACTACCAGGTTTCAGAAGCTCAAACAAGTTCAATGGCTTTTCAGAGAATTCTTACTCATTCCCCACTACCAACATAAAATCAAAAGGGACTAGTTCAGCAGAAGATGCATCTTCAGTTACTGTTGATGCTCCAGAGATGTCTGAATCAACAAGTTCATCAAACCATATCCCTGAAACAAAGAATGAAAGTGCAGTTAACACAAACCAAAAGAATCAAGATAAGGAACATGCTCGGTTACAGAATGGCAGTGTAGACTCGTCTCAACATAATGAGGCAATGGCACTAGGAACAATGTCAAATGAACCCCAACAAACATGTCAGCAAGTGAAGACAGACACAGCCTCCCAATGTGTCAGTAGTAGTAATAATAACGCTTCATCAGAAGTGACCAAATCCTCATTAGGGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATATCATGGTGACGCAGTCAATGATGAAGAGGTTAGGCTATAGCATGGATGTTGTGAATAATGGAGTGGAAGCTGTGCGTGCAGTTCAACGCCATACTTATGATATCATTTTGATGGATGTTTACATGCCAGTTATGAATGGCCTTCAAACAACAAAACTGATTCGGTCTTATGAGGAAACTGGCAATTGGGATGCTGCAAGAAAAGATGGAATTGAACAATGCTTACCAATTTCACATGAAGGTTCTTTACCACCTAAAAACCGGATCCACATCATCGCGATGACAGCAAACACAATGTCAGAGAGTGCTGAGGAGTGTTATGCATATGGTATGGACTCGTTTGTATCAAAACCTGTGACATTCCAAAAATTGAAAGACTGTCTAGAACAGTACCTGAGGTGA 3003 0.4046 MVCEMESDCIEDMDVEVLSSMWPEDIGSDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNRFEEENYGGDKRPVSILDEIYYTWQDVPVPLRKSDVVVQNKRIEIDAEYDTAVYWKQRALQLERQLEASVNREQILTDKLQESIKNFERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREDIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVSEPPFAKAEGHQKMTIDQSTNSAQGVKEEKNCLVGQKHNDHPSQNHSFNDECRTSVKSECSMNGDTEEQTHSTETTVWIRCDVYDTGIGIPEKALPNLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTACDNSDDPDELSDVDDNDEDTTEGFFQFQPRTLGSLFSSKGPTRPQNLLPGFRSSNKFNGFSENSYSFPTTNIKSKGTSSAEDASSVTVDAPEMSESTSSSNHIPETKNESAVNTNQKNQDKEHARLQNGSVDSSQHNEAMALGTMSNEPQQTCQQVKTDTASQCVSSSNNNASSEVTKSSLGPKILLVEDNKINIMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAARKDGIEQCLPISHEGSLPPKNRIHIIAMTANTMSESAEECYAYGMDSFVSKPVTFQKLKDCLEQYLR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00507 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Phco2g00507 1000 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Phco2g00507 1000 Coils Coil 92 119 - -
Phco2g00507 1000 SMART REC_2 856 995 IPR001789 GO:0000160
Phco2g00507 1000 ProSiteProfiles Histidine kinase domain profile. 380 670 IPR005467 -
Phco2g00507 1000 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 13 999 - -
Phco2g00507 1000 FunFam Histidine kinase 5 850 1000 - -
Phco2g00507 1000 Gene3D PAS domain 214 350 - -
Phco2g00507 1000 MobiDBLite consensus disorder prediction 741 808 - -
Phco2g00507 1000 Coils Coil 992 1000 - -
Phco2g00507 1000 CDD HATPase_EvgS-ArcB-TorS-like 489 667 - -
Phco2g00507 1000 MobiDBLite consensus disorder prediction 741 788 - -
Phco2g00507 1000 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Phco2g00507 1000 PRINTS Bacterial sensor protein C-terminal signature 654 667 IPR004358 GO:0016310|GO:0016772
Phco2g00507 1000 PRINTS Bacterial sensor protein C-terminal signature 595 609 IPR004358 GO:0016310|GO:0016772
Phco2g00507 1000 Gene3D - 361 438 - -
Phco2g00507 1000 Pfam Response regulator receiver domain 858 926 IPR001789 GO:0000160
Phco2g00507 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 668 IPR003594 -
Phco2g00507 1000 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Phco2g00507 1000 Coils Coil 190 210 - -
Phco2g00507 1000 Gene3D - 851 1000 - -
Phco2g00507 1000 Gene3D - 439 674 IPR036890 -
Phco2g00507 1000 ProSiteProfiles Response regulatory domain profile. 857 999 IPR001789 GO:0000160
Phco2g00507 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 669 IPR036890 -
Phco2g00507 1000 FunFam Putative histidine kinase 5 361 438 - -
Phco2g00507 1000 CDD HisKA 372 434 IPR003661 GO:0000155|GO:0007165
Phco2g00507 1000 SUPERFAMILY CheY-like 856 1000 IPR011006 -
Phco2g00507 1000 FunFam Histidine kinase 5 215 350 - -
Phco2g00507 1000 MobiDBLite consensus disorder prediction 705 727 - -
Phco2g00507 1000 CDD REC_hyHK_CKI1_RcsC-like 858 995 - -
Phco2g00507 1000 SMART HKATPase_4 484 670 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00507 Phco-Chr2 4682428 4688610 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco2g00507 HATPase_c 1e-27 CL0025