Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00490 ATGGAACCAACATGCTTGGATACTTCACTCAATCTCAACGTTGATCCTTCTTCTGTGCACATGGATGGGGTTTTGGTGGAAGAGTTGCGGAGACTGAGTTGTGAGAACAAGAGGTTGACTGAGATGTTGACCCAATTGTGTGACAACTATATGGTTTTGCAGAAGCAATTCACCCAATTGATCAACACAAATTTTGAGCAAGACCAACTTGAATCACGCAAGAGAAAGGCAGAGAGTGAATGTTGTACCAACAGATTTGGTAATGGTGAGTGCAGCTCCATAACAGAGGATTCCTTCAAAAAGTACAAGGATTTCAACTCCTCCCCGAAGGTTTCCAAGGTTCTTGTGAAGACTGAAGCTTCTAACAATAGCTTATATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTCACAAGGGATAACCCTTCTCCTAGAGCTTACTTCAAGTGCTCCTTTGCCCCAAGCTGCCCTGTTAAAAAGAAGGTGCAAAGGAGTTTAGAAGACCCTACAATACTTGTTGCAACATATGAAGGAGAGCATAACCATGGTCATCAAAGAGGTGAAATATCAGTTGGTTCAAAGCAAAGTGAAGGAACTAAAGGGTCAAGTCCAGTTTCTTCACCAACACCCACAATTCGAAGTGCTTGCCCCACTGTAACGCTTGATTTGGTCAAATCAGGATTGGTTGAAAGTGCACAAAAGTCATCTATCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAGGGATCCCAATTTCACTACAGCACTTGCCTCTGCCATTTCAGGAAAAATTCTAGAGCCCAAATGGTGA 828 0.4215 MEPTCLDTSLNLNVDPSSVHMDGVLVEELRRLSCENKRLTEMLTQLCDNYMVLQKQFTQLINTNFEQDQLESRKRKAESECCTNRFGNGECSSITEDSFKKYKDFNSSPKVSKVLVKTEASNNSLYVMDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSLEDPTILVATYEGEHNHGHQRGEISVGSKQSEGTKGSSPVSSPTPTIRSACPTVTLDLVKSGLVESAQKSSIQQFLVQQMATSLTRDPNFTTALASAISGKILEPKW 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00490 275 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 270 IPR044810 GO:0003700
Phco2g00490 275 Pfam WRKY DNA -binding domain 129 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g00490 275 Gene3D WRKY domain 110 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco2g00490 275 FunFam WRKY transcription factor 40 112 189 - -
Phco2g00490 275 Coils Coil 29 49 - -
Phco2g00490 275 SMART WRKY_cls 127 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g00490 275 MobiDBLite consensus disorder prediction 191 216 - -
Phco2g00490 275 MobiDBLite consensus disorder prediction 181 216 - -
Phco2g00490 275 ProSiteProfiles WRKY domain profile. 122 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g00490 275 SUPERFAMILY WRKY DNA-binding domain 125 187 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00490 Phco-Chr2 4443200 4444387 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco2g00490 WRKY 2.5e-23 CL0274