LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g00489	ATGCTCGTTCAAGTCCTCAACACTGCAAACATGGTTGATGAAAAGGTGGAAGCTCTTAAATCTGAGTTACAGAGAGTGAGAGAGGAGAATAACGCTCTAAGAGTGATGCTTGAAGTTCTAAGCAGCAAGTACACAATGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAGTTCAAATCAAATAGGATCAGTAACAGAACCAATCTTGGATGCCAACAAGAGAAGGAGACTAGAGTTTCCCACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACTCCCCACGGATGATAGTTTGATAGTAAAAGATGGATATCAGTGGAGGAAGTATGGACAGAAGGTTACCAAAGACAATGCTTCACCAAGAGCTTACTTCAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTGGTTGCAACTTATGATGGAGAGCACAACCATGGTGCCCTTCACGAGTCATCTTCATCCACACCTAGAGGCTCATCAACTGCCAATCAGTTGCCTAGCATGGCAAATGACAAAGAAGCGATGAACATTTTGGCTCTTTCTGGATGGTCTCAAACAGATAGCAGATACATTGAAGAAGTAATGCATCAACATAACTATGGCAGCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAAGATCCTGAGTTCACCATGTCATTAGCAGAAGCAGTTGCCCGCACCATCACTGGAGAGCTCAAGCAGCAAGATCTAGACCTGAATTTGAATATTCCGGAAGAGTGA	810	0.4247	MLVQVLNTANMVDEKVEALKSELQRVREENNALRVMLEVLSSKYTMLESHLQEINKEQHKGMSSNQIGSVTEPILDANKRRRLEFPTAKKPLQIFVRTLPTDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHESSSSTPRGSSTANQLPSMANDKEAMNILALSGWSQTDSRYIEEVMHQHNYGSNIKVEEYVSSLIKDPEFTMSLAEAVARTITGELKQQDLDLNLNIPEE	269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g00489	269	Pfam	WRKY DNA -binding domain	108	165	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco2g00489	269	Gene3D	WRKY domain	94	167	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco2g00489	269	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	14	253	IPR044810	GO:0003700
	Phco2g00489	269	SUPERFAMILY	WRKY DNA-binding domain	103	166	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Phco2g00489	269	SMART	WRKY_cls	107	167	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco2g00489	269	ProSiteProfiles	WRKY domain profile.	102	168	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Phco2g00489	269	Coils	Coil	9	57	-	-
	Phco2g00489	269	MobiDBLite	consensus disorder prediction	165	186	-	-
	Phco2g00489	269	MobiDBLite	consensus disorder prediction	168	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g00489	Phco-Chr2	4424098	4425776	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Phco2g00489		WRKY	2.6e-22	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g00489	2	4424098	4425776	Phco7g00688	7	5228647	5230039	PCT