Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00462 ATGGACGCAGGTTACAATCCTCGTACGGTCGAAGAGGTCTTTAGGGATTTCAAAGGTCGCAGAGCTGCGCTGATTAAAGCTCTCACTACTGATGTTGAAGAGTTCTACCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCATTAGGCATTAACTTTGCCAGAGATGGTATGCAAGATAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAAGCGACTATTTAACATGATTAATGATCTTCCAACTATATTTGAGGTTGTTACTGGGATGTCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAACAAATCAAAATCAAACTCTAAGCGAGGTTCTGAATCAAAGAACACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGTGGCTTTGGAAGCTGAAGATGAAGAGGAACATGAAGAGACTTTCTGTGGGGCATGTGGAGAGAGCTATACTGCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGCAAGTGTGTGAAGATTACCCCTGCAAGGGCTGAGCACATCAAGCAGTACAAATGTCCATCCTGCAGCAACAAGAGAGCTAGACCTTGA 756 0.4444 MDAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMSKKQGKEKSSVSNHSSNKSKSNSKRGSESKNTKAMQSKDEDDEGVALEAEDEEEHEETFCGACGESYTADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00462 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Phco2g00462 251 Pfam PHD-finger 197 247 IPR019787 -
Phco2g00462 251 CDD PHD_AL_plant 197 247 IPR044104 -
Phco2g00462 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Phco2g00462 251 MobiDBLite consensus disorder prediction 142 158 - -
Phco2g00462 251 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Phco2g00462 251 FunFam PHD finger alfin-like protein 190 246 - -
Phco2g00462 251 MobiDBLite consensus disorder prediction 142 191 - -
Phco2g00462 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Phco2g00462 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Phco2g00462 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
Phco2g00462 251 SMART PHD_3 197 245 IPR001965 -
Phco2g00462 251 MobiDBLite consensus disorder prediction 159 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00462 Phco-Chr2 4160828 4164685 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Phco2g00462 Alfin 2.6e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00462 2 4160828 4164685 Phco2g00462 2 4160828 4164685 ECH
Phco7g00614 7 4650800 4657816 Phco2g00462 2 4160828 4164685 ECH