Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00447 ATGGCATTTCGATTTGGGCTCCTTATTTTGCCTTTGCTAATTTGTTTGAATGTTAACTCTGTGGAATCTGATGATGGAGCAACGCTGTTGGAGATGAAGAAGTTATTCAGGGATGTGGATAATGTTCTATATGATTGGACAGACTCACCATCATCAGATTATTGTGCCTGGAGAGGGATAACATGTGATAATGTCACATTTAATGTTGTTGCACTCAATCTTTCAGGGTTGAATCTTGATGGGGAAATTTCACCTGCAATAGGGAAGCTTCAGAGTTTGGTCTCTATTGACCTGAGAGAAAACAGGTTATCAGGGCAGATACCAGATGAGATTGGTGACTGTTCTTCATTGAAGAACTTGGACTTGTCATTTAATGAAATTAGAGGGGATATACCATTTTCTATTTCTAAATTAAAACAACTGGAGAATCTGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTCTAGACCTGGCTCAAAATAATCTAAGTGGTGAAATACCAAGGCTTATATACTGGAACGAAGTTTTGCAGTATCTGGGCTTGAGAGGGAACAATTTGATTGGTTCGCTATCACCAGACATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAACAATAGCCTGACAGGAAGTATTCCAGAAAACATTGGCAATTGTACTACCTTCCAGGTTTTGGATTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAATAGCTACTTTGTCATTGCAAGGCAATAAACTCTCTGGGCATATTCCATCGGTGATCGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGGGCTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTATACTTGCATGGAAACAAGTTGACTGGCTTCATCCCCCCGGAGCTTGGAAATATGACAAAACTTCACTATTTAGAATTGAATGACAATCACTTAAGTGGACATATTCCCCCTGAGCTTGGAAAGCTTACTGATCTCTTTGACTTAAATGTTGCGAATAACAATCTCGAAGGAACAATTCCTAGTAATATTAGCTCATGTAAAAATCTCAACAGCCTCAATGTGCATGGAAACAAGTTGAGTGGAACAATTCCCCCTGCTTTGCAAAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTTCAGGGTGCAATTCCAATTGAACTGTCACGGATTGGTAATTTGGATACACTGGATATTTCAAATAATCATTTAGTTGGATCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCAGAAACAATTTGACAGCAGTTATTCCTGCAGAATTTGGAAATCTTAGAAGTGTCATGGAAATTGATCTTTCAAATAATCAACTGTCTGGCCTGATTCCTGAAGAACTTAGCCAGCTTCAGAACATGATATCCTTGAGACTTGAAAACAACAAATTAACTGGTGATGTGGCGTCACTTTCGAATTGCCTTACTCTCTCTGTGCTTAATGTGTCCTATAACAAACTATTTGGTGTTATCCCCACTAGTAACAACTTTACCAGGTTTCCCCCTGACAGTTTCATCGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCTTGGTTCTCGACCTGCAGAGCGAGTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTAATGGTATTGCTGGCAGCTTGCCGACCACACAGTCCTCCTTTTCCTGATGGATCACTTGACAAGCCAGTTAATTACTCACCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAACCTGAGTGAGAAGTATATAATTGGATATGGTGCGTCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCACTATCCCCAATGCATTAAAGAATTTGAAACTGAACTCGAGACTGTTGGCAGCATTAAGCACCGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCCCCTTATGGCCACCTTCTGTTTTATGACTACATGGACAATGGCAGTCTGTGGGATCTTCTTCATGGACCTACTAAGAAGAAAAAGCTTGACTGGGATCTGCGTCTAAAAATAGCACTTGGAGCAGCACAAGGGCTTGCCTATCTACACCATGATTGCAGTCCTCGAATAATCCACAGGGATGTGAAATCATCAAACATTTTATTGGACGCAGACTTTGAGCCCCATCTTACTGATTTTGGCATTGCCAAAAGCCTCTGCCCCTCAAAGTCCCATACTTCTACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACTTCCCGTCTCACCGAGAAGTCTGATGTGTACAGTTATGGCATCGTTTTACTCGAGTTGCTAACTGGAAGGAAAGCTGTTGATAATGAATCCAACCTCCACCATCTGATTTTGGCCAAGGCAGCAACCAATGCTGTAATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAAGACCTTGGAGCTGTAAAAAAGGTTTACCAGCTCGCTCTATTATGCACAAAGAGGCAGCCCGCTGACAGGCCGACAATGCACGAAGTGACACGTGTACTTGGGAGCCTTGTGCCATCAAACACCCCTCCAAAACAACCAGCTGCACTACCTCCTGCTTCAAACCCATCTGCCAAAGTGCCATGCTACATGGATGAGTATGCAAACCTCAAGACTCCACACTTGGTGAACTGCCCCTCAATGAGCACCTCAGATGCACAGCTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAGTGA 2940 0.4177 MAFRFGLLILPLLICLNVNSVESDDGATLLEMKKLFRDVDNVLYDWTDSPSSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLRENRLSGQIPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLIGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPSVIGLMQALAVLDLGCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNKLSGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNHLVGSIPSSLGDLEHLLKLNLSRNNLTAVIPAEFGNLRSVMEIDLSNNQLSGLIPEELSQLQNMISLRLENNKLTGDVASLSNCLTLSVLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCLGSRPAERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMDNGSLWDLLHGPTKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDADFEPHLTDFGIAKSLCPSKSHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILAKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSNTPPKQPAALPPASNPSAKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00447 979 ProSiteProfiles Leucine-rich repeat profile. 116 139 IPR001611 GO:0005515
Phco2g00447 979 Gene3D Phosphorylase Kinase; domain 1 619 721 - -
Phco2g00447 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 617 721 - -
Phco2g00447 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 767 779 IPR008271 GO:0004672|GO:0006468
Phco2g00447 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Phco2g00447 979 Pfam Protein kinase domain 649 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00447 979 ProSitePatterns Protein kinases ATP-binding region signature. 652 674 IPR017441 GO:0005524
Phco2g00447 979 Pfam Leucine rich repeat 359 414 IPR001611 GO:0005515
Phco2g00447 979 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515
Phco2g00447 979 Gene3D Ribonuclease Inhibitor 287 568 IPR032675 -
Phco2g00447 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
Phco2g00447 979 SUPERFAMILY Protein kinase-like (PK-like) 623 912 IPR011009 -
Phco2g00447 979 SMART serkin_6 646 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00447 979 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Phco2g00447 979 Gene3D Ribonuclease Inhibitor 187 277 IPR032675 -
Phco2g00447 979 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 722 923 - -
Phco2g00447 979 ProSiteProfiles Protein kinase domain profile. 646 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00447 979 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Phco2g00447 979 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 99 - -
Phco2g00447 979 SUPERFAMILY L domain-like 302 559 - -
Phco2g00447 979 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Phco2g00447 979 SMART LRR_typ_2 401 425 IPR003591 -
Phco2g00447 979 SMART LRR_typ_2 210 234 IPR003591 -
Phco2g00447 979 SMART LRR_typ_2 162 186 IPR003591 -
Phco2g00447 979 SMART LRR_typ_2 449 472 IPR003591 -
Phco2g00447 979 SMART LRR_typ_2 473 496 IPR003591 -
Phco2g00447 979 SMART LRR_typ_2 90 114 IPR003591 -
Phco2g00447 979 SMART LRR_typ_2 329 353 IPR003591 -
Phco2g00447 979 Gene3D Transferase(Phosphotransferase) domain 1 722 923 - -
Phco2g00447 979 SUPERFAMILY L domain-like 24 306 - -
Phco2g00447 979 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00447 Phco-Chr2 3929546 3936949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Phco2g00447 Pkinase 2.9e-44 CL0016