Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00434 ATGGAAGGAATTAGAGTGAAGGAGGAAGAAACAGTGACATGTGGTGGTGGTTCATCATCATCATCATCTTCGTCTTTGAGCTTTTCTCCACAACCTATGGAAGGGTTGAACGAGGTGGGTACCCCACCATTTTTGACAAAGATCTATGACATGGTGGAAGATCCTTCCACAGATTCTATTGTGTCATGGAGCACTTCTTGCAATAGCTTTGTTGTGTGGGATTCTCACAAGTTTTCTACAAACATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGGTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTGGCAGGACAAAGACACTTATTGAAGGCCATAAAGAGAAAAAGAAAAGTGTCACTGAGCATGCAAGAAAGAGGAGGTGGAGCATGTGTTGAACTGGGGGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGACAGGAACATTTTGATGGCAGAAATTGTGAGGTTGAGGCATCAACAGCTGAACTCAAGAGACCAATTGAGTGCCATGGAGACCAGATTGCAAGCAACAGAGAAGAAACAGCAAAAGATGATGATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGTTCACAAGACCCCCCAAAGTAGAGAAATGTTGAATGTTGAAATCAATAGGAAAAGGAGACTAATTGCTAGCCAGAGTTTGGAGAACTTGCAACAAGATGATCCTATAACATTGGTGGACTATCCAAGCCTTGATCAAGATTTGGCAACTACGAAGCCTGAGATGGACACTTTTTTCTCACCAGCTTTTGATAGTGAACATGGTAATGAAATCAAAGAGCCTGCATTAGATTCAGATATAGCAGCTAGTCAGAGTTATTTTGGAGACACAATATTGGAGGACTTTTTCATCAAAGACTTGGTTAATGAGGATCCAAAGGATGGAGTTATAATTGGTGATTGTTCCCAAATTGATGTGCCACTGGAGGATTTGGTAGCAAACTCTGATGATTGGATGGAGCAATTTCAAGACCATGTAGATCATATGGACTATTCAGGATCCAAACCATAG 1116 0.4104 MEGIRVKEEETVTCGGGSSSSSSSSLSFSPQPMEGLNEVGTPPFLTKIYDMVEDPSTDSIVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKAIKRKRKVSLSMQERGGGACVELGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMETRLQATEKKQQKMMIFLAKALKNPSFMQQLVHKTPQSREMLNVEINRKRRLIASQSLENLQQDDPITLVDYPSLDQDLATTKPEMDTFFSPAFDSEHGNEIKEPALDSDIAASQSYFGDTILEDFFIKDLVNEDPKDGVIIGDCSQIDVPLEDLVANSDDWMEQFQDHVDHMDYSGSKP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00434 371 MobiDBLite consensus disorder prediction 13 33 - -
Phco2g00434 371 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00434 371 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 246 IPR027725 -
Phco2g00434 371 Coils Coil 160 180 - -
Phco2g00434 371 MobiDBLite consensus disorder prediction 1 33 - -
Phco2g00434 371 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00434 371 SUPERFAMILY "Winged helix" DNA-binding domain 41 133 IPR036390 -
Phco2g00434 371 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00434 371 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00434 371 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco2g00434 371 FunFam Heat shock transcription factor 1 37 134 - -
Phco2g00434 371 Gene3D - 37 134 IPR036388 -
Phco2g00434 371 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00434 Phco-Chr2 3763319 3765190 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco2g00434 HSF_DNA-bind 1.2e-32 CL0123