Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00428 ATGTCCAATTTGACGTCTGCATCAAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAACGGTTTTTTCCATGCTCACCAACACTCCTCTACTTCAATAAATCAAGAACAACAACCAAAAAAGAAGAGAAGTCTTCCTGGGCACCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCACAGACCCTATTGGCAACAAACAGGTTTGTTTGTGAGATTTGTCAGAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACAGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACACTTTTCTCTAGGAGGGACAGCTTTATCACTCACAGAGCTTTCTGTGATGCCTTAGCACAGGAAAGTGGTAGAGCAGTGAACCCTCACTCTCTATTATCATCACACTCCCAATTTCGAAGCCATGGCCTTCAATTTCAAGCACCATCATCACTGGTAATGAAAAGAGAACAAGAGTTCAACCTATTAGGTCAAGAAATTCCATCATGGTTATCTTCTCCAACAGTGTTAGAAGAATCACTGCACAGTCAAACACTAAGAACAACCTTAGACTTCACCTCCACACCACAGTTGTTTCCCACACATGCCAACCACTCCTTATTCAACCATGATCAAAACCCTAGCCCTACTTCTACAACAACTTCTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACAACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATAGGAGTAACAGTAAGTGCAGCAGCAGCTTCACAAGCCATGATAGTGAGACCCCACTTGTTGCTGCAGCAGGTTCACGTGCCTGAATGTACAACAACAACTACTACTACAACAGGGTATAATAATATGGCTTCATCTTCAGCCGTTTCTGGAATGGTTATGGCTATCCCTTCACGTGAAGAAATAGGGACTCATGGATTTGCTCGTGGCTTGGCATCTTGA 1206 0.4353 MSNLTSASSEISASSGIRNDNGFFHAHQHSSTSINQEQQPKKKRSLPGHPDPDAEVIALTPQTLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSHSQFRSHGLQFQAPSSLVMKREQEFNLLGQEIPSWLSSPTVLEESLHSQTLRTTLDFTSTPQLFPTHANHSLFNHDQNPSPTSTTTSFLPSLSSFHYSTTSPHMSATALLQKASQIGVTVSAAAASQAMIVRPHLLLQQVHVPECTTTTTTTTGYNNMASSSAVSGMVMAIPSREEIGTHGFARGLAS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00428 401 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 355 IPR031140 -
Phco2g00428 401 MobiDBLite consensus disorder prediction 1 54 - -
Phco2g00428 401 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Phco2g00428 401 Gene3D Classic Zinc Finger 121 204 - -
Phco2g00428 401 Gene3D Classic Zinc Finger 50 120 - -
Phco2g00428 401 MobiDBLite consensus disorder prediction 1 41 - -
Phco2g00428 401 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Phco2g00428 401 FunFam protein indeterminate-domain 12-like 49 117 - -
Phco2g00428 401 SMART c2h2final6 70 92 IPR013087 -
Phco2g00428 401 SMART c2h2final6 111 141 IPR013087 -
Phco2g00428 401 SMART c2h2final6 146 166 IPR013087 -
Phco2g00428 401 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Phco2g00428 401 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00428 Phco-Chr2 3709478 3712590 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g00428 None None None