Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00418 ATGACTCCTTATTCTCTCCATTCACCAGCTCCTTCCATACAACCTCAAACCCAAATCTTCATTTCTCCTGGTAATCAGGACTGCCCTACCTTTTTCAACATATTTGATCCAAGGAAAACCATAGAAATCGGAGGCTTCAGACAAAATTATCAACAGGATGAGATGGTATTGCATGATGGATCATCAAGCAACAATCTCAATTCACCTGAGCCAGTTATGGTTGATCCAATTAGCAGCACAAGTGAGGGTAATTTAGCCTCATACAAAATGGATGAGGAAGACATAAAAAATGGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAGAAAAATGATGAGAAGGAGTATGAGTCCAACCACTGACAGATTGAATCCACAAGGGCAAGAAAGCAGATACAGCCAAAGAAGCCCTCGAAACAACAGCAGTAACACCACTAGGGTTTGTTCCGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGATTTGGTGACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGCACAACAAGGAAAAGAAGTCTCGTGCAAATCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACTACTACTACTACTGTTACTGCTACTGCAGGCTCATCTGAGGGGGTGAGAAAGATTGAATATTTCAAGGACTTTGCCATAAGTTTGAGGAGTAAAAACTCCTCTTTCCAACAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTGATGGAGTTATCTTGTGGTTTTGTCCACTGA 873 0.4307 MTPYSLHSPAPSIQPQTQIFISPGNQDCPTFFNIFDPRKTIEIGGFRQNYQQDEMVLHDGSSSNNLNSPEPVMVDPISSTSEGNLASYKMDEEDIKNGHGSGKWMSSKMRLMRKMMRRSMSPTTDRLNPQGQESRYSQRSPRNNSSNTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNDLVTPINSVCAKTRVHNKEKKSRANHFAQFKNKYKSTTTTTVTATAGSSEGVRKIEYFKDFAISLRSKNSSFQQVFPRDEVAEAAMLLMELSCGFVH 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00418 290 MobiDBLite consensus disorder prediction 118 169 - -
Phco2g00418 290 ProSitePatterns GATA-type zinc finger domain. 152 177 IPR000679 GO:0006355|GO:0043565
Phco2g00418 290 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 49 290 - -
Phco2g00418 290 SMART GATA_3 146 197 IPR000679 GO:0006355|GO:0043565
Phco2g00418 290 MobiDBLite consensus disorder prediction 121 165 - -
Phco2g00418 290 Pfam GATA zinc finger 152 185 IPR000679 GO:0006355|GO:0043565
Phco2g00418 290 CDD ZnF_GATA 151 188 IPR000679 GO:0006355|GO:0043565
Phco2g00418 290 ProSiteProfiles GATA-type zinc finger domain profile. 146 182 IPR000679 GO:0006355|GO:0043565
Phco2g00418 290 Gene3D - 142 226 IPR013088 GO:0006355|GO:0008270
Phco2g00418 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 146 186 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco2g00418 GATA 2.6e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00418 2 3620502 3622491 Phco7g00582 7 4365096 4365829 PCT