Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00402 ATGTCGTCATTTATTGGCATGCTTACATCAGAAGTGACTGAACAAAATGATAATAGTAGTGATAGAAATAGTAATAGGTGTGTGTTGTTAGGTGTAAGGACTGAGGAGGACAAAAGAGATCAGAGAGGGCCCGTTAAAGGCTGCACCACAAATGAGTGGCACTGCACCAAAGGCTACTACCAATGCCTACTCTCAGTCTTTAGCATCGTGTTTTCTGCTTACGGTTCTTGGAGGGTAACTAGCCATCCTTTGAAGAAGTGTTCCATGATGGCTCAGCTTGTTTTGATGGAGAATAATATGTACAGTGCTTCACTGGACATTTCTGGCAGAAATTCTGCTGCCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTACTTGCTGCAGAACAAGGTGAATCTACAAGTGATGTCCATGTAGATGGTTGCTTCATAAACCCTGCTAGAATTTCTGATTCCAATTCATTTGTCACAATACAAGGAAAGAGTATTGTAGGAGATGTCTCAAATCCCATTAACAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGCTGATTCACTTGCTGATAGAATAGGCCTTCAAGATAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTGCATTGGAGGCACTGGGGCCATACATCTTCAATAATTGGCAAGATACATCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAGGTATTCAGAAGTGGAATGTGAGCAAGTTTCTGAAAGCTCCAGTGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAGCTTGGGCAATTTTTCCTATAATTCCTCTAATTGTAGTAAAGAGCTATCACTAAGTCTTGCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCTTAGCATGAATGGAACAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTCTATGAGATTAAGTTCTGACAAACTTGTCAAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCCACATATTCATTTGAAAATGTAGAGCTGATAAATTATTCAGCTTCTGGTGTTAGAGCAGGAGGAAATAAGTCAGCTTCAGCTTTCACACCAAATAGAAGGGTAGCGAATAATCAAAATGAAAATTCCATTTATGGAGCACATGTAGAAGAATTTCCATCGGAAAGACATGCAGCTGACTCAAACAAATCCCAACTTCTCATGCTTCTACAGCTGGTGGACAATGGATATAGTCAGTGTTTGGATGAGGTTCATACTGTGGTATCTGCTTTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTATACAAGGACTTGAGAGAGAGGATTAGCAATTGTATTCTTGCCATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAGAAAAGATCAGCTATGGAGACCCCAAAGGGGCTTGCCAGAGAGATCAGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTATTGGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCACGTGTTCGGTTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCACTCACAGAAGCAGGATAAACATGAACAGTCAAATGTTGAATATCAATTGA 1998 0.4139 MSSFIGMLTSEVTEQNDNSSDRNSNRCVLLGVRTEEDKRDQRGPVKGCTTNEWHCTKGYYQCLLSVFSIVFSAYGSWRVTSHPLKKCSMMAQLVLMENNMYSASLDISGRNSAAIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGESTSDVHVDGCFINPARISDSNSFVTIQGKSIVGDVSNPINNSAIQEHLAGGRPIASADSLADRIGLQDNLQSSAALPHSMSALEALGPYIFNNWQDTSNPLAATFGDHAYDELSGIQKWNVSKFLKAPVANGTEIQAYSSIGNLVQNGWTSSNVASLGNFSYNSSNCSKELSLSLARSPPTTGQCSEMSCSNASLSMNGTSSGLEQPSCSSKELSMRLSSDKLVKFSPAILGSRYLAGVQEIFAQIATYSFENVELINYSASGVRAGGNKSASAFTPNRRVANNQNENSIYGAHVEEFPSERHAADSNKSQLLMLLQLVDNGYSQCLDEVHTVVSAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESTHRSRINMNSQMLNIN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00402 665 Pfam Associated with HOX 384 522 IPR006563 -
Phco2g00402 665 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 332 648 - -
Phco2g00402 665 Pfam Homeobox KN domain 583 622 IPR008422 GO:0003677|GO:0006355
Phco2g00402 665 CDD homeodomain 566 627 IPR001356 GO:0003677
Phco2g00402 665 SMART prehox3 378 523 IPR006563 -
Phco2g00402 665 SMART HOX_1 566 630 IPR001356 GO:0003677
Phco2g00402 665 ProSiteProfiles 'Homeobox' domain profile. 563 626 IPR001356 GO:0003677
Phco2g00402 665 SUPERFAMILY Homeodomain-like 568 635 IPR009057 -
Phco2g00402 665 Gene3D - 569 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00402 Phco-Chr2 3452588 3456888 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco2g00402 POX 9.9e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00402 2 3452588 3456888 Phco2g00402 2 3452588 3456888 ECH
Phco2g00402 2 3452588 3456888 Phco7g00578 7 4336515 4339732 PCT