Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00385 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCTGAAGAAGATGCAGCACTCAAAGGCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTCAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAGCTTCATGGCAGAACCGACAATGATGTGAAAAACCACTGGAACACGAAACTGAAGAAGAAGATGATGGCAGGAAAAGTTAGTCTCAAAACATTTACTGAAAATGGCACTAGTACTCTTCCTTCAACTTCAACCCCATTACCAACACCCCAAAGTCTCAATATTCAAAATTCACCTTTCAATGCTTCACCAAATCAAACTTTGGTGCTACCAATCTTGGAAGCTAATGATAATAATGCATTCACCGTTAATCAAAACAGCATCATTAGTTTTGACCAAACGAATCATCATGGGTTGTATACTCCACAAATCATGCATGGTGTCTCACGAACTGGTGCAGCAAGTTCAAGGATCAACAATAACACCAGTGATAATAACAGTAATAGTCACATGGTGTCACTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCAATTGCAGTGAATTACAACAAGTGTGTCGTGTCACAGCCTCAACAACAACAGCAACAAAGTGATGAATCCATGGACATGTTCATGGATTTTGGCTTTGGATTTCCCTATGATTTTGCCAATGGTCCTAACTGCCATTATGAGAGAGTTGGCGAAATTTTTGCTCCAGAATGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 933 0.4212 MGRAPCCDKANVKRGPWSPEEDAALKGYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRWSAIASKLHGRTDNDVKNHWNTKLKKKMMAGKVSLKTFTENGTSTLPSTSTPLPTPQSLNIQNSPFNASPNQTLVLPILEANDNNAFTVNQNSIISFDQTNHHGLYTPQIMHGVSRTGAASSRINNNTSDNNSNSHMVSLSQEGSSSISDSSSIAVNYNKCVVSQPQQQQQQSDESMDMFMDFGFGFPYDFANGPNCHYERVGEIFAPEWVDFSYADIKPH 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00385 310 Gene3D - 70 134 - -
Phco2g00385 310 Gene3D - 7 68 - -
Phco2g00385 310 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco2g00385 310 CDD SANT 71 113 IPR001005 -
Phco2g00385 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco2g00385 310 FunFam Transcription factor RAX3 7 68 - -
Phco2g00385 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco2g00385 310 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco2g00385 310 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phco2g00385 310 CDD SANT 16 62 IPR001005 -
Phco2g00385 310 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco2g00385 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Phco2g00385 310 MobiDBLite consensus disorder prediction 207 235 - -
Phco2g00385 310 SMART sant 13 64 IPR001005 -
Phco2g00385 310 SMART sant 67 115 IPR001005 -
Phco2g00385 310 PANTHER OS09G0431300 PROTEIN 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00385 Phco-Chr2 3321429 3324076 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00385 Myb_DNA-binding 1.1e-12 CL0123