Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00381 ATGAGTTTTCATGATACACCAAACACAGGACTTGGTCTTGCTCTTGGCCTTGGTCTTGTTACCTTCCATGATCAATCAGAGAATTGCATGAAGGGTGATGACACCCCCTTGAGAGAAAGCCACAAGATCAGAAGGGTGGAGAATCCATCAAAATATAACAAGAAATACCCTTCACTTTCATTAGGACCACCAGAAGAAGATGATGATGAAGTCAAAAATGATCAACCAAGTTCAAAGACTGAATCCTATGAATATTTTCGTCCCCAAGCTTCTTCTCCGAGTGTGGTGTCTTCATTTTCCAACTCCTCTAGCATCAAGAGGGAGAGAGAACATGCCTTGGGAGAAGAATTTGAGGTAGAAATAGAGAAGGTTCCAACAAGGGTAGGTGAAGCTGATGAAGATGGTAACCCCAGGAAGAAACTTCGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAAACTTCAGACAGCATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATCAAGCTGAATCTGCGAACGAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAGCTAAAGCAAACTGAGTCAGATTGTGATCTATTAAAGAAGTGTTGTGACACTCTCACAGAAGAAAACAAGAGGCTGCAAAAGGAGCTTCAAGAACTGAAGTCAATGCAAGCAATGCCAGTGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTATGCCCTTCTTGTGAGAGAATTTGTGGGAGTAAAAGTGATGATGAGAATAGCAACAACAATAGTTCTACATTACTTTTTGGTTCAAAAACACATCATCATAACTTTCACAAAAGTAACTATCCATTCTCCCACTCTCCATCTGCTGCATGCTAA 888 0.4178 MSFHDTPNTGLGLALGLGLVTFHDQSENCMKGDDTPLRESHKIRRVENPSKYNKKYPSLSLGPPEEDDDEVKNDQPSSKTESYEYFRPQASSPSVVSSFSNSSSIKREREHALGEEFEVEIEKVPTRVGEADEDGNPRKKLRLTKEQSAILEENFRQHSTLNPKQKQELAIKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDTLTEENKRLQKELQELKSMQAMPVPLYMQIPAATLSLCPSCERICGSKSDDENSNNNSSTLLFGSKTHHHNFHKSNYPFSHSPSAAC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00381 295 SUPERFAMILY Homeodomain-like 134 195 IPR009057 -
Phco2g00381 295 MobiDBLite consensus disorder prediction 61 77 - -
Phco2g00381 295 Pfam Homeobox associated leucine zipper 194 227 IPR003106 GO:0006355|GO:0043565
Phco2g00381 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 267 - -
Phco2g00381 295 Gene3D - 129 200 - -
Phco2g00381 295 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Phco2g00381 295 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Phco2g00381 295 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Phco2g00381 295 MobiDBLite consensus disorder prediction 29 101 - -
Phco2g00381 295 MobiDBLite consensus disorder prediction 78 101 - -
Phco2g00381 295 Coils Coil 200 230 - -
Phco2g00381 295 SMART HOX_1 136 198 IPR001356 GO:0003677
Phco2g00381 295 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Phco2g00381 295 CDD homeodomain 137 195 IPR001356 GO:0003677
Phco2g00381 295 MobiDBLite consensus disorder prediction 29 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00381 Phco-Chr2 3224538 3226737 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco2g00381 Homeodomain 2e-16 CL0123