Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00379 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGATGTGGCAAGAGTTGCCGTCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCCGAAGAAGAAGACAACATTATCTGCAGTCTATACATCAGTATCGGAAGCAGGTGGTCGGTGATTGCAGCACAATTGCCGGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCATCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAGGCAAGAAATTAGTGATGCTAATAGAAGGAGTAGTGATGGTGATTCTTCTTCCTTATCCATGGTTCAGGAAAACAGTAGCACCAGTCAACAACAACCATGTTGGCCACAGAACATTAACATGCCTGTGCTACCACCACCAGTAGTACCCTTGCCATACACAGACCAAGGCCCAGGTTTCAACGACCAAGATTCTATCAAGAAACTCCTCATCAAACTTGGAGGAAGATTTTCAGGTGATTATTACCAGCCTACCCTTGATGGGTTGAATCTTCAATTCTCATTAGAAGGGCAACAAGTTTACCAAGAGCAAGTCCATGTTGGTTCTTCTTCTTCTTCAGCCTGCATTGCAAACAACGAGGTACGATTTGCACAAACTGGTCAATACTCTGGAGTTGATGACTTGGTGCAAGGACAAGGTGGTAATTTCACTCCCTCATTTGAGGAAATGGTGCCTTCTTCAAATTATTCAGATGGGTTGGAATTCTTGTACAATGAGGGCATGATCCATAAGATAGCTGACTCTACTACTACTACTACTTGTCACCAAAATACCACCACCACCACAGATTGGGGTGAAACTACCACTTCCATTTATCACCATCATTCACTTGCTTCCCATTTTCAAGGTCAAGGTGTGACACAAGAATGTGCTCTGCAAGAGTTTAGCTACCCCGAGGCACAATAA 1089 0.4417 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVRQEISDANRRSSDGDSSSLSMVQENSSTSQQQPCWPQNINMPVLPPPVVPLPYTDQGPGFNDQDSIKKLLIKLGGRFSGDYYQPTLDGLNLQFSLEGQQVYQEQVHVGSSSSSACIANNEVRFAQTGQYSGVDDLVQGQGGNFTPSFEEMVPSSNYSDGLEFLYNEGMIHKIADSTTTTTCHQNTTTTTDWGETTTSIYHHHSLASHFQGQGVTQECALQEFSYPEAQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00379 362 Gene3D - 7 68 - -
Phco2g00379 362 FunFam Transcription factor MYB36 70 142 - -
Phco2g00379 362 CDD SANT 71 113 IPR001005 -
Phco2g00379 362 FunFam Transcription factor RAX3 7 68 - -
Phco2g00379 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Phco2g00379 362 SMART sant 13 64 IPR001005 -
Phco2g00379 362 SMART sant 67 115 IPR001005 -
Phco2g00379 362 Gene3D - 70 146 - -
Phco2g00379 362 CDD SANT 16 62 IPR001005 -
Phco2g00379 362 MobiDBLite consensus disorder prediction 119 174 - -
Phco2g00379 362 PANTHER OS09G0431300 PROTEIN 1 304 - -
Phco2g00379 362 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco2g00379 362 MobiDBLite consensus disorder prediction 131 172 - -
Phco2g00379 362 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco2g00379 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Phco2g00379 362 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco2g00379 362 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phco2g00379 362 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00379 Phco-Chr2 3189526 3191147 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g00379 Myb_DNA-binding 1.4e-14 CL0123