Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00355 ATGTCTTCATCGGAGTCCCAAGACCCGGCTGCTGCATCGGAGGTCCAGCTTAGCAAAAAGGCCGCTAAGAAGGAGGCCGCCAAGGCGGACAAACTCCGCCGCCGCCAAGAAATCGCCGCCGCGTCCGCCGCCACTGCAAATCTGTCCGTCGACGAGGTTGACCCCCTCGCCGAAAACTACGGCGACGTGCCGCTTGTCGAGCTGCAGTCCAAGGCGCCCGCCAATGTTGACGACTGGACGCGCGTGGAGGCGCTTGGAGTCGCGCTCGAGAACAGGACGGTGCTGATCCGAGGTACGGCGCAGACTATTCGACCGGTCGGGAAGAAGATGGCGTTCTTAGTCATAAGAGAGGACTACTTCACGGTTCAGTGCCTGGTGCAGGCACAACCCGGCACGGTGAGCCCGCAGATGGTGAAGTTCGCCGCCTCACTCAACCGCGAATCCATTGTGGATGTCGTAGGTGTTGTTACGATCCCCACAGCTCCCATCAAAGGTGCCACCCAGCAGGTGGAAATTCAAGTGAGGAAGTTACATTGCATCAGTAGGGCTATGCCTACTCTGCCTATTAATCTTGATGATGCTGCTCGGAGTGAGATAGAAATTGAGAAGGCTATTCAGGCTGGTGAACAACTGGTTCGCGTTAATCAGGACACACGATTGAACTTCAGAGTGCTTGACCTGCGAACACCAGCTAATCAAGGAATTTTCAGTGTTCAGTCTCACGTTTCCAATGCATTTAGACAGTTCTTATTATCTGAAGGTTTTCGCGAAATCCACACTCCAAAGTTGATTGCTGGATCTAGTGAGGGTGGAGCTTCTGTTTTCAGACTGGACTACAAAGGCCAACCTGCATGCCTGGCCCAGTCGCCTCAGCTTCACAAGCAAATGTGCATATGTGCACGTTTTGGTCGTGTTTTTGAGATTGGTCCTGTATTTAGAGCAGAAGATTCCTATACTCACAGGCATCTGTGTGAGTTTACAGGTCTTGATCTTGAAATGGAGATTAAGAAGCATTATTTTGAGGTTATGGATGTAGTTGATAGATTATTTGTCGCGATGTTTGACAGTTTGAACCAACATTGTAAGAAAGATTTGGAAGCTGTGGGGTCCCAGTACCCCTTTGAACCTTTAAAGTATCTGCGGAATACACTACGGCTAACATATGAAGAAGGGATTCAGATGCTCAAGGATGTTGGAGTAGAAATTGAACCTTTTGGTGACTTGAATACTGAAGCGGAGAGGAAATTGGGTCAACTAGTTTTGGAGAAGTATGGCACTGAGTTCTACATGCTTCATCGATATCCTTTGGCTGTAAGGCCATTTTATACAATGCCTTGCTATGACAATCCAGCATACAGCAACTCATTTGATGTCTTTATTCGAGGTGAGGAGATAATTTCAGGAGCTCAGCGTGTTCATGTGCCAGAAATTTTGGAACAACGTGCAGCAGCTTGCGGCATTGATGTGAAGACAATATCTACGTACATTGATGCTTTCAGATATGGTGCACCGCTACATGGTGGTTTTGGAGTAGGGTTGGAGCGTGTTGTGATGCTCTTCTGCGGCCTCAATAACATTCGTAAAACATCGCTTTTCCCTCGTGACCCACTTAGGATTGCACCATGA 1626 0.4883 MSSSESQDPAAASEVQLSKKAAKKEAAKADKLRRRQEIAAASAATANLSVDEVDPLAENYGDVPLVELQSKAPANVDDWTRVEALGVALENRTVLIRGTAQTIRPVGKKMAFLVIREDYFTVQCLVQAQPGTVSPQMVKFAASLNRESIVDVVGVVTIPTAPIKGATQQVEIQVRKLHCISRAMPTLPINLDDAARSEIEIEKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFSVQSHVSNAFRQFLLSEGFREIHTPKLIAGSSEGGASVFRLDYKGQPACLAQSPQLHKQMCICARFGRVFEIGPVFRAEDSYTHRHLCEFTGLDLEMEIKKHYFEVMDVVDRLFVAMFDSLNQHCKKDLEAVGSQYPFEPLKYLRNTLRLTYEEGIQMLKDVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYMLHRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRVHVPEILEQRAAACGIDVKTISTYIDAFRYGAPLHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00355 541 CDD AspRS_cyto_N 93 193 - -
Phco2g00355 541 Gene3D - 57 184 IPR012340 -
Phco2g00355 541 Pfam tRNA synthetases class II (D, K and N) 216 535 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco2g00355 541 SUPERFAMILY Class II aaRS and biotin synthetases 211 538 IPR045864 -
Phco2g00355 541 SUPERFAMILY Nucleic acid-binding proteins 57 186 IPR012340 -
Phco2g00355 541 PRINTS Aspartyl-tRNA synthetase signature 456 472 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco2g00355 541 PRINTS Aspartyl-tRNA synthetase signature 496 510 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco2g00355 541 PRINTS Aspartyl-tRNA synthetase signature 303 316 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco2g00355 541 PRINTS Aspartyl-tRNA synthetase signature 286 298 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco2g00355 541 CDD AsxRS_core 213 536 - -
Phco2g00355 541 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 236 533 IPR006195 -
Phco2g00355 541 FunFam Aspartate--tRNA ligase, cytoplasmic 188 541 - -
Phco2g00355 541 FunFam Aspartyl-tRNA synthetase, cytoplasmic 56 186 - -
Phco2g00355 541 PANTHER ASPARTYL-TRNA SYNTHETASE 4 541 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Phco2g00355 541 Gene3D Bira Bifunctional Protein; Domain 2 188 541 IPR045864 -
Phco2g00355 541 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 77 541 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Phco2g00355 541 NCBIfam aspartate--tRNA(Asn) ligase 88 541 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00355 Phco-Chr2 2951219 2956756 Dispersed