Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00165 ATGGGGGCAATTGCAGAGAGTGTGGTTTCAATGTTGTTGTTAATGTTTGGGTTAACAATGGGAATGGGTTTGAGTTCGAGAACGGAATGGTTGGCGTTAAGGGAGCTTCGATCATCATTGGGGATTAGGGCACAGTATTGGCCCATAAAAGCAGAACCGTGCGGGAACTGGACCGGAGTTCAGTGCCGGAAAGGTCGAGTTGTGGGTATAAACTTGTCCGGTTTGAGGAGAACCCGGTTGGGTAGCCTTAACCGAAGTTTTGAAGTGAGTTCTCTTGAGAATTTGACACTGTTAGAATCGTTTAATGCTTCTGGGTTTGTGCTTAATGGGTCTATTCCTGAGTGGTTGGGTGCGAGACTGAGGGTGTTGGATGTCCTTGACCTTAGGTTTTGTTCTATAACGGGTTGGATTCCTTATTCAATTGGGGAGTTGGGTGTGTTGAGGGTTTTGATGCTTTCAGGGAATGTTCTCACTGGTAGAATCCCTTCAACGCTTGGGAACCTCACAAGGTTGTCTGTTCTTGATCTCTCTGGTAACTCTCTTTCAGGCTACGTGCCTGCTTCTGTGTCTAAACTTGGGAATCTCACACGGCTTGATCTTTCTGGCAATTACTTTTCTGGGTCTGTTCCACCTGAACTGGGTGCGCTTTCGATTCTTCAAAAGTTGAACCTTTCTGAGAATTCTTTTACTGGGTCGGTTCCCTCTCAACTGGGTAACCTTTCTAAGTTGGTTGAGGTTGATCTTAGTATGAATTTTCTGTCGGGTTCGTTTCCAGGTGATTTGTTTTTTTCTCGGTTCTTGGCCCTCCAGGTTCTCATTCTCAGAGGGAATTCGTTTGATGGTGTTCTTCATGATAATCTTAGGCCAACGCCCAGGTTGAGCTTTCTTGATGTGTCCAGTAACAACCTCACTGGGACACTGCCAAATTTCACAAGTTGGAATGTTAGCTCTGCTGGTGTTGTGTTCAATTTGTCAAACAATTTGTTCTATGGAGATCTGAACATTTCACTGTACATGTTTAAAAAAATTGATTTGTCAAGTAATTATTTGGAAGATGAGGTGCAAGGTGGTGATAACGTTATTCTAGATAGAAATTGCCTACAGATGACTCCAAACCAGAGGAATTTGGAAGAGTGCAAAAAATTTTATGTTGCAAGAAATTTACCCTTTGTATTCCGAGGACATCAGTCCAGGAGTAGCAGAAGGGTGGTATTCATACTGGTAGGAATATTTGGTGGGCTTGGCTTTATTGCTGTGCTGACATTGGTCCTCGTGCTGGTTCTAAAACAATGTCATAATCGTAGAAGCTTGGAAGTTCAAAGGGGGACCAAAGATGAGGGACCTGTTCAGGAAGGGGAAATCCCTATACCTCCTAAGGATGCTGATTTTGTGACTGGCGTGGGAGAAGCATTTAGTTCTGAGAAAATTATCCATTTAACTGGCAATTTTGCTGAAGCGAATATCATAAAGCATGGCCATTCCGGGGTCCTCTTCTTGGGAGTCTTGGAAGGTGGAGCAACTGTGGTTGTCAAAAGGATAGATTTGAATTTATTTAAGAGAGAATCATACGTCGTGGAATTGGGACTATTAAGTAAGGTTTCACATTCAAGATTTGTCCCAATCCTGGGCCACTGCTTGGACAATGAGAATGAGAAATGTATAGTTTACAAGTACATGCCAAATAGAGATTTGGCTACTTCTTTGCACAGAGTCAACGAGTCAGATGGTAAATTGCAGTCCCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTAGCTTACCTACATGAGTGCAGCCCTCCTCTTGTCCACAGGGATGTCCAAGCTAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTGAGCCAGGTTACCCCCCAAGGAGATATTCAACAGGGAGTCATCTCAAGGGTTTTCAGCAAGCCACCACCTTCTAGCGAAGGGGATCCTGGTAAATCATCAGTGACATGCACCTACGACGTGTACTGTTTCGGGAAGATTTTACTGGAACTCATTACTGGTAACACTGAAGTGAGCAAGTCAGATGATGGCACTACAAAAGAGTGGTTAGAGCAAACCTTGCCTTACATCACTCTGTATGATAAAGAACGTGTGACTAAGATAGTTGACCCACAATTGATTTTGGATGAGGACCTATTCGAAGAAGTATGGGCCATGGCAATTGTGGCTCATGCATGTTTGAATCCCAAGCCTTCCAAACGTCCTCCCATGAGACATGTCCTGAAAGCATTGGAAAATCCATTGAAGATTGTGAGAGAAGAAAATATTAGCTCAGCTAGGTTGAGAACAAACTCTTCTAGGAAATCTTGGAGCACTGCGTTCTTTGGTAGCTGGAGACACAGCTCATCAGACAGTGTTGTGGCCGTAACACATACAAACAAAGAGAGTACAAGTGACACTAAAAAATCAAGAGTAGGTTCTCAAAGCAGTGGAAATGATCACTCGTCTTCCAATAAAAGGTCATCCAATGAAATTTTCCCTGAACCATTGGAAATGCAAGATGTGGAGACTGGAGGGGCAAGATAA 2574 0.4343 MGAIAESVVSMLLLMFGLTMGMGLSSRTEWLALRELRSSLGIRAQYWPIKAEPCGNWTGVQCRKGRVVGINLSGLRRTRLGSLNRSFEVSSLENLTLLESFNASGFVLNGSIPEWLGARLRVLDVLDLRFCSITGWIPYSIGELGVLRVLMLSGNVLTGRIPSTLGNLTRLSVLDLSGNSLSGYVPASVSKLGNLTRLDLSGNYFSGSVPPELGALSILQKLNLSENSFTGSVPSQLGNLSKLVEVDLSMNFLSGSFPGDLFFSRFLALQVLILRGNSFDGVLHDNLRPTPRLSFLDVSSNNLTGTLPNFTSWNVSSAGVVFNLSNNLFYGDLNISLYMFKKIDLSSNYLEDEVQGGDNVILDRNCLQMTPNQRNLEECKKFYVARNLPFVFRGHQSRSSRRVVFILVGIFGGLGFIAVLTLVLVLVLKQCHNRRSLEVQRGTKDEGPVQEGEIPIPPKDADFVTGVGEAFSSEKIIHLTGNFAEANIIKHGHSGVLFLGVLEGGATVVVKRIDLNLFKRESYVVELGLLSKVSHSRFVPILGHCLDNENEKCIVYKYMPNRDLATSLHRVNESDGKLQSLDWITRLKIAIGAAEGLAYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSQVTPQGDIQQGVISRVFSKPPPSSEGDPGKSSVTCTYDVYCFGKILLELITGNTEVSKSDDGTTKEWLEQTLPYITLYDKERVTKIVDPQLILDEDLFEEVWAMAIVAHACLNPKPSKRPPMRHVLKALENPLKIVREENISSARLRTNSSRKSWSTAFFGSWRHSSSDSVVAVTHTNKESTSDTKKSRVGSQSSGNDHSSSNKRSSNEIFPEPLEMQDVETGGAR 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00165 857 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Phco2g00165 857 SUPERFAMILY L domain-like 71 352 - -
Phco2g00165 857 Pfam Protein tyrosine and serine/threonine kinase 489 759 IPR001245 GO:0004672|GO:0006468
Phco2g00165 857 ProSiteProfiles Protein kinase domain profile. 483 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g00165 857 MobiDBLite consensus disorder prediction 805 857 - -
Phco2g00165 857 FunFam Leucine-rich repeat receptor protein kinase EMS1 186 286 - -
Phco2g00165 857 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Phco2g00165 857 Gene3D Ribonuclease Inhibitor 188 388 IPR032675 -
Phco2g00165 857 FunFam Predicted protein 456 558 - -
Phco2g00165 857 Gene3D Phosphorylase Kinase; domain 1 459 558 - -
Phco2g00165 857 MobiDBLite consensus disorder prediction 818 840 - -
Phco2g00165 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 191 768 IPR046959 -
Phco2g00165 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 88 185 - -
Phco2g00165 857 FunFam Putative LRR receptor-like serine/threonine-protein kinase 559 780 - -
Phco2g00165 857 SMART LRR_typ_2 168 191 IPR003591 -
Phco2g00165 857 SMART LRR_typ_2 144 167 IPR003591 -
Phco2g00165 857 SMART LRR_typ_2 240 264 IPR003591 -
Phco2g00165 857 SMART LRR_typ_2 192 216 IPR003591 -
Phco2g00165 857 SUPERFAMILY Protein kinase-like (PK-like) 468 760 IPR011009 -
Phco2g00165 857 Gene3D Transferase(Phosphotransferase) domain 1 559 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00165 Phco-Chr2 1303478 1307523 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Phco2g00165 PK_Tyr_Ser-Thr 3.3e-18 CL0016