Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00042 ATGGGAAAACTTTCATTACCATCTCCTTTTTCGAGCAAGAAGTTTTATTTTCTACACAAAGTTATTTGGAAATCCTTTGCCATATTGAGATACTTGCTGCAAAATGGGACATGTGGATGTAGCTCACAAAAAACGACACTGTCATCATTTCCATGTGACCCTGCCTTCAGCAAGCTAGAAAAAAAAATGGACAATTTTATGTTTCTTTTGGGTAGCCTCATTGGATTATGCAGCTTCACAATCACTACCTTTGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACTTTTTATGGGGGTAGTGATGCTTCAGGCACTATGGGGGGAGCTTGTGGGTATGGGAATCTGTATGCAACTGGTTATGGAACTAGAACTGCAGCTTTAAGCACTGCCTTATTTAATGATGGAGCTTCCTGTGGTGAGTGCTACAAAATCATATGTGATTACAAAGCAGACTCCAGATGGTGCATCAAAGGAACATCTGTCACCATAACCGCCACAAACTTTTGCCCTCCCAATTTTGCTCTTCCTAACAATAATGGAGGCTGGTGCAACCCACCCCTCAAGCATTTTGACATGGCCCAACCCGCTTGGGAAAAGATTGGTATTTACAGAGGAGGAATCGTGCCCGTCTTATTCCAAAGGGTTCCATGCAAAAAGCACGGAGGGGTTAGGTTCAGTGTGAATGGAAGGGACTACTTTGAGCTTGTGTTGATCAGCAATGCGGGTGGAGCTGGATCCATACAATCTGTGTCCATTAAAGGATCGAAAACTGAGTGGATGGCTATGTCAAGAAACTGGGGTGCTAATTGGCAATCCAACGCATATTTGAATGGTCAATCTTTGTCCTTCAGGGTCACAACCACTGATGGACAAACCAGAGTTTTCCAAAATATAGTTCCAGCAAGTTGGAGTTTTGGTCAAACTTTCTCTAGCCCAGTTCAGTTCTAA 954 0.435 MGKLSLPSPFSSKKFYFLHKVIWKSFAILRYLLQNGTCGCSSQKTTLSSFPCDPAFSKLEKKMDNFMFLLGSLIGLCSFTITTFAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGYGTRTAALSTALFNDGASCGECYKIICDYKADSRWCIKGTSVTITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNAGGAGSIQSVSIKGSKTEWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGQTRVFQNIVPASWSFGQTFSSPVQF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00042 317 CDD DPBB_EXPA_N 90 219 - -
Phco2g00042 317 Gene3D - 224 317 IPR036749 -
Phco2g00042 317 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 234 313 IPR007117 -
Phco2g00042 317 Gene3D - 78 220 IPR036908 -
Phco2g00042 317 FunFam Expansin 224 317 - -
Phco2g00042 317 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 109 224 IPR007112 -
Phco2g00042 317 FunFam Expansin 80 220 - -
Phco2g00042 317 SUPERFAMILY PHL pollen allergen 221 313 IPR036749 -
Phco2g00042 317 PRINTS Expansin/Lol pI family signature 108 126 IPR007118 GO:0005576
Phco2g00042 317 PRINTS Expansin/Lol pI family signature 207 223 IPR007118 GO:0005576
Phco2g00042 317 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Phco2g00042 317 PRINTS Expansin/Lol pI family signature 299 313 IPR007118 GO:0005576
Phco2g00042 317 PRINTS Expansin/Lol pI family signature 90 105 IPR007118 GO:0005576
Phco2g00042 317 PRINTS Expansin/Lol pI family signature 130 148 IPR007118 GO:0005576
Phco2g00042 317 SMART dpbb_1 126 214 IPR007112 -
Phco2g00042 317 Pfam Expansin C-terminal domain 225 302 IPR007117 -
Phco2g00042 317 PANTHER EXPANSIN-A15 80 313 IPR002963 GO:0009664
Phco2g00042 317 SUPERFAMILY Barwin-like endoglucanases 82 242 IPR036908 -
Phco2g00042 317 PRINTS Expansin signature 199 212 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 299 315 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 163 173 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 150 161 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 121 135 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 182 199 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 223 235 IPR002963 GO:0009664
Phco2g00042 317 PRINTS Expansin signature 270 291 IPR002963 GO:0009664
Phco2g00042 317 Pfam Lytic transglycolase 126 213 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00042 Phco-Chr2 511528 514292 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00042 2 511528 514292 Phco2g00042 2 511528 514292 ECH
Phco2g00042 2 511528 514292 Phco7g00256 7 1786057 1787603 PCT