Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00016 ATGCATGGAGTTGCCATAGACATAGAAAAAGGCCTTGCACGTGGGAAGAGAAAAAAGAGTCTGAATATGGCACAAGAAGAAGAAAAAAGTGATTTTGAAGAAGAGGGAAAAGAGATGGAGGAGCAAATAGACCCAAGGAGTGGCTTCTGCCCCTCCAACTCAGTTTTCTACAGCAAGCGGAAGCCACTCCCACTCCCTCCCAACAACACCCTCGACGTCACCACCTTCATCTCCTCCCGAGCCCACCGCGGAACCACCGCCTTCATCGACGCCGCCACAGGCCGCCAGCTCAGCTACAGCCAGCTATGGCGAGCGGTGGAGGGCGTGGCGGGCTCTCTCTGGGACATGGGGATCCGAAAGGGCAACGTGGTCCTGCTCCTCTCTCCCAATTCCATCGACTTCCCGGTGGTGTGCCTGGGCATCATGTCCCTGGGCGCCGTCATCACCACCACCAACCCCCTCAACACCACGCAGGAAATCGCCAAGCAGATCGCCGATTCCAAGCCCCTTCTCGCCTTCACCACCCCTCTCTTGCTCCCCAAACTCACCAAGGCAGCACCCTCTCTACCAATCATTCTCATGGACACCACCGCTCATCCACCCCTTCCCCACCCCAAAATTGTAGGCACGCTTCACGACATGGCCAAGAAGGAACCCCGGGCTCAGCGCGTGAGGGAGCGCGTGGAGCAGGACGACACGGCCACGCTGCTCTACTCCTCCGGCACCACGGGACCCAGCAAGGGCGTGCTTTCCTCCCACCGGAACCTCATAGCCATGGTCCAAATCGTTCTCGGTCGCTTCCACGTCGAAGACAACGAAACCTTCATCTGCACGGTCCCCATGTTTCACATATACGGTCTCGTCGCCTTCGCCACCGGCCTCCTCGCCTCCGGCTCCACCATCGTCGTCCTCTCCAAGTTCGAGATGCACGACATGCTCTCCTCCATCCAGAGGTTCCGCGCCACCTACCTCCCCCTGGTTCCACCCATTCTGGTTGCCATGCTCAACAACGCAGACGCCATCAAGGGAAAGTACGATATCCGGTCCCTGCATTCGGTCCTCTCCGGTGGGGCTCCCTTGAGTAAGGAGGTTATAGAGGGGTTTGTCGACAAGTACCCCAACGTCACCATCCTTCAGGGTTATGGTTTGACGGAATCCACCGGCGTTGGGGCCTCCACCGACTCCTTGGAGGAGAGTCGCAGGTACGGCACTGCGGGCCTCTTGTCGCCGGCCACCCAAGCAATGATCGTCGACCCTGACTCCGGCCACTCGCTTCCGGTTAACAGCACCGGTGAGCTCTGGCTCAGGGGTCCCACCATTATGAAAGGTTATTTCAATAACGAAGAGGCCACAACATCAACCCTTGATTCAAAAGGATGGTTAAGAACAGGGGATGTTTGTTACATTGACAATGATGGATTTATATTTATTGTGGATAGATTAAAAGAGCTTATCAAATACAAGGGATATCAGGTGCCTCCAGCAGAACTGGAGGCCTTGTTACTGACTCATCCTGCTATTTCAGATGCGGCTGTTATCCCGTATCCAGATAAGGAGGTTGGGCAGTTTCCAATGGCATATGTGGTGAGGAAGGATGGAAGTAGCTTATCAGAAAGCCAAGTTATGGATTTTGTTGCAGGACAGGTGGCTCCTTACAAGCGGATTCGAAAAGTTGCGTTTATCTCCTCCGTACCTAAAAATCCATCTGGCAAAATTCTTCGCAAGGATCTCATCAAGCTCGCAACTTCTAAACTTTGA 1758 0.5472 MHGVAIDIEKGLARGKRKKSLNMAQEEEKSDFEEEGKEMEEQIDPRSGFCPSNSVFYSKRKPLPLPPNNTLDVTTFISSRAHRGTTAFIDAATGRQLSYSQLWRAVEGVAGSLWDMGIRKGNVVLLLSPNSIDFPVVCLGIMSLGAVITTTNPLNTTQEIAKQIADSKPLLAFTTPLLLPKLTKAAPSLPIILMDTTAHPPLPHPKIVGTLHDMAKKEPRAQRVRERVEQDDTATLLYSSGTTGPSKGVLSSHRNLIAMVQIVLGRFHVEDNETFICTVPMFHIYGLVAFATGLLASGSTIVVLSKFEMHDMLSSIQRFRATYLPLVPPILVAMLNNADAIKGKYDIRSLHSVLSGGAPLSKEVIEGFVDKYPNVTILQGYGLTESTGVGASTDSLEESRRYGTAGLLSPATQAMIVDPDSGHSLPVNSTGELWLRGPTIMKGYFNNEEATTSTLDSKGWLRTGDVCYIDNDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPAISDAAVIPYPDKEVGQFPMAYVVRKDGSSLSESQVMDFVAGQVAPYKRIRKVAFISSVPKNPSGKILRKDLIKLATSKL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00016 585 Gene3D - 54 482 IPR042099 -
Phco2g00016 585 Pfam AMP-binding enzyme 80 487 IPR000873 -
Phco2g00016 585 FunFam 4-coumarate--CoA ligase 2 483 584 - -
Phco2g00016 585 Gene3D - 483 584 IPR045851 -
Phco2g00016 585 ProSitePatterns Putative AMP-binding domain signature. 236 247 IPR020845 -
Phco2g00016 585 FunFam Long-chain-fatty-acid--CoA ligase FadD 57 482 - -
Phco2g00016 585 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 49 579 - -
Phco2g00016 585 Pfam AMP-binding enzyme C-terminal domain 496 571 IPR025110 -
Phco2g00016 585 SUPERFAMILY Acetyl-CoA synthetase-like 76 583 - -
Phco2g00016 585 Coils Coil 22 42 - -
Phco2g00016 585 CDD 4CL 65 577 - -
Phco2g00016 585 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00016 Phco-Chr2 185082 187818 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00016 2 185082 187818 Phco2g00016 2 185082 187818 ECH